Re: [Freesurfer] mris_flatten Version 6 vs. 7

2023-04-07 Thread Fischl, Bruce R.,PHD
Yes, well, that is totally my fault! Doug is much better about adding help text than I am ☹ Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Nasr, Shahin,Ph.D. Sent: Friday, April 7, 2023 5:18 PM To: Freesurfer support list Subject: Re: [Freesurfer] mris_flatten Version 6 vs. 7

Re: [Freesurfer] mris_flatten Version 6 vs. 7

2023-04-07 Thread Nasr, Shahin,Ph.D.
Hi Bruce, In both versions, I use this command: mris_flatten rh.occip.patch.3d rh.occip.patch.flat They are applied to the same patch. Also may be I missed it but when I used help (mris_flatten --help) I didn't see any of these flags. Regards, From:

Re: [Freesurfer] mris_flatten Version 6 vs. 7

2023-04-07 Thread Fischl, Bruce R.,PHD
External Email - Use Caution Hi Shahin What is your command line? mris_flatten does some random sampling of distances since the whole N^2 distance matrix is too big. You can remove the randomness by either specifying -norand or using a specific seed like -seed 1234. That said,

[Freesurfer] T1 with contrast

2023-04-07 Thread Carlos Alcocer
External Email - Use Caution Can you use T1 with contrast in freesurfer or does it have to be non-contrast images? Tks, Carlos ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] Fwd: Research scientist positions at OSUMC!

2023-04-07 Thread Douglas N. Greve
Forwarding on an interesting job working Jessica Turner! Forwarded Message Subject:Research scientist positions at OSUMC! Date: Fri, 7 Apr 2023 13:42:55 + From: Turner, Jessica To: Douglas N. Greve External Email - Use Caution

[Freesurfer] VM Password

2023-04-07 Thread Janssen, J.A.M. (Julia)
External Email - Use Caution Dear Freesurfer developers, I am attempting to set up virtual box with the Ubuntu image provided in the installation guide. I would like to request the password to unzip 'FS_7_2_0_ubuntu_18_04_06.ova.7z' - I hope this is the right place to ask. If