Re: [Freesurfer] Issue with running recon-all

External Email - Use Caution Hello No, I can not load /arc/project/3T/fsaverage/surf/lh.sphere.reg in freeview. I am encountering the "readFloat: fread failed" error. Also I cant attach the log file because I encounter with this response: Your email Is being held until the lis

Re: [Freesurfer] Issue with running recon-all

External Email - Use Caution Seems like something went wrong in your installation then. You should try reinstalling and making sure that file is ok Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of hmarz...@student.ubc.ca Sent: Wednesday, May 24, 2023 4:09 AM To:

[Freesurfer] fMRIPrep: anatomical part

External Email - Use Caution Can I use fmriprep to analyze only the anatomical part? -- Michelle Diniz Lopes ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The info

Re: [Freesurfer] Cortical thickness of elephant brain

External Email - Use Caution Can you try using lh.thickness.mgz instead of just lh.thickness? On 5/23/2023 1:12 PM, Malav Shah wrote: External Email - Use Caution Hi there, I believe the problem occured, because I generated pial surface by segmenting, and then tessella

Re: [Freesurfer] fMRIPrep: anatomical part

External Email - Use Caution you should ask the authors of fmriprep On 5/24/2023 9:32 AM, Michelle Diniz wrote: External Email - Use Caution Can I use fmriprep to analyze only the anatomical part? -- Michelle Diniz Lopes ___

[Freesurfer] FW: Inquiry about mris_euler_number command

External Email - Use Caution Dear all, I hope this email finds you well. I was trying to run mris_euler_number command for QC of the recent Freesurfer segmentation. It seems as though there is no information about the command available in your wiki page. I can see recent literat

[Freesurfer] fsfast percent signal change

External Email - Use Caution Dear experts, I struggle with the functional analysis in Freesurfer. How can I calculate the percent signal change in a specific contrast in an ROI? I will be grateful for your suggestions (especially if you point toward a specific function). Kind re

Re: [Freesurfer] Inquiry about mris_euler_number command

External Email - Use Caution Hi Jenna It is pretty straightforward. Just give it a surface as input (see below) Cheers Bruce mris_euler_number Help NAME mris_euler_number SYNOPSIS mr

[Freesurfer] conjunction

External Email - Use Caution Dear experts, Another question: How do I do conjunction analysis? I have my contrasts on 1lvl, I have the second level, I need a conjunction of two contrasts. I would guess "mergecontrasts-sess", unfortunately, it doesn't seem to work. [image: image.p