External Email - Use Caution
Seems like something went wrong in your installation then. You should try
reinstalling and making sure that file is ok
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of hmarz...@student.ubc.ca
Sent: Wednesday, May 24, 2023 4:09 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Issue with running recon-all
External Email - Use Caution
Hello
No, I can not load /arc/project/3T/fsaverage/surf/lh.sphere.reg in freeview. I
am encountering the "readFloat: fread failed" error.
Also I cant attach the log file because I encounter with this response:
Your email Is being held until the list moderator can review it for approval.
The reason it is being held:
Message body is too big: 22531815 bytes with a limit of 10000 KB
Regards
Hengameh
________________________________
From: hmarz...@student.ubc.ca<mailto:hmarz...@student.ubc.ca>
Sent: Tuesday, May 23, 2023 2:07:10 PM
To: Freesurfer support list
Subject: Re: Issue with running recon-all
Sure. I have attached it.
No, I can not load /arc/project/3T/fsaverage/surf/lh.sphere.reg in freeview. I
am encountering the "readFloat: fread failed" error.
Regards
Hengameh
________________________________
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Fischl, Bruce R.,PHD
<bfis...@mgh.harvard.edu<mailto:bfis...@mgh.harvard.edu>>
Sent: Tuesday, May 23, 2023 1:49:41 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Issue with running recon-all
[CAUTION: Non-UBC Email]
External Email - Use Caution
Hmm, can you send us the recon-all.log file? Can you load
/arc/project/3T/fsaverage/surf/lh.sphere.reg in freeview? Maybe it was
corrupted at some point?
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of hmarz...@student.ubc.ca<mailto:hmarz...@student.ubc.ca>
Sent: Tuesday, May 23, 2023 4:48 PM
To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Issue with running recon-all
External Email - Use Caution
Hello Bruce,
Thank you for your response. I have verified the available disk space, and it
appears that I have sufficient space. I am currently using
freesurfer-darwin-macOS-dev.pkg, which was developed in March 2023.
It seems that the issue lies in the inability to generate just the BA.stats
files, including rh.BA_exvivo.stats, rh.BA_exvivo.thresh.stats, and others.
Do you have any additional suggestions or recommendations?
Thank you once again for your assistance.
Best regards,
Hengameh
________________________________
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Fischl, Bruce R.,PHD
<bfis...@mgh.harvard.edu<mailto:bfis...@mgh.harvard.edu>>
Sent: Monday, May 15, 2023 10:21:58 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] Issue with running recon-all
[CAUTION: Non-UBC Email]
External Email - Use Caution
Hi Hengameh
By far the most common reason for this is running out of disk space.
Cheers
Bruce
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
On Behalf Of hmarz...@student.ubc.ca<mailto:hmarz...@student.ubc.ca>
Sent: Monday, May 15, 2023 1:02 PM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Issue with running recon-all
External Email - Use Caution
Dear developers,
I am writing to report an issue I encountered while running recon-all on some
subjects. Specifically, I received an error message stating "error: freadFloat:
fread failed" for several of the subjects.
Starting surface-based mapping
Reading source registration
/arc/project/3T/fsaverage/surf/lh.sphere.reg
error: freadFloat: fread failed
error: freadFloat: fread failed
...
I am wondering if any of you have experienced this issue before, and if so, I
would greatly appreciate any recommendations on how to proceed with resolving
it.
Thank you for your help.
Hengameh
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