[Freesurfer] Password request for virtual machine installation

External Email - Use Caution Dear technical personnel: Greeting, I want to obtain the password so that I can extract the virtual machine file 'FS_7_2_0_ubuntu_18_04_06.ova.zip' Thanks for your time! hdfghdjg...@foxmail.com

[Freesurfer] Freeview sudden termination

External Email - Use Caution Hi, I am running freesurfer/7.3.2 and had an issue with freeview sudden termination. The error message is *sub-002/label/aparc.annot.ctabMRISreadAnnotationIntoArray: vertex index out of range: 538980362 i=2020300A, in_array_size=132205* *annot

[Freesurfer] Freeview update for FS v6.0.0 on MacOS

External Email - Use Caution Hello FreeSurfer Developers, I have installed FreeSurfer v6.0.0 in my MacOS 12.6.7 but I got Freeview crashed due to PETSC error (which has been fixed in FreeSurfer v7.1.1). For the consistency with my previous work, I do not want to upgrade to

Re: [Freesurfer] mris_preproc error: cannot allocate memory

External Email - Use Caution It looks like it is corrupted. Can you try ‘mris_info /media/sf_T1/freesurfer_results/HCA9679715_V1_MR/surf/lh.sphere.reg’? I think it probably will fail the same way. Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of MANSSOUR

[Freesurfer] FreeSurfer Pass Code request

External Email - Use Caution Greetings, I am a postdoc researcher at Washington University School of Medicine in MR imaging and I'm in the process of installing FreeSurfer. I've reached the point where I need a pass code in order to complete the process. I'm installing on a

Re: [Freesurfer] mris_preproc error: cannot allocate memory

External Email - Use Caution This is the error from log: Reading source surface reg /media/sf_T1/freesurfer_results/HCA9679715_V1_MR/surf/lh.sphere.reg error: Cannot allocate memory error: TAGskip: tag=116798, failed to calloc 116799 bytes! The TAG number looks wrong. I’m

[Freesurfer] mri_fdr questions

External Email - Use Caution Freesurfer experts, I have a surface overlay that represents -log_10(p) for a statistical test that I ran using tools other than mri_glmfit. Does mri_fdr still give accurate fdr thresholds, or does it require some of the additional files generated

[Freesurfer] Open research assistant position at Ohio State University

External Email - Use Caution The Cognition and Brain Circuitry Laboratory at the Ohio State University is recruiting a research assistant. Primary duties include: conducting neuroscience research on the functional and structural architecture of the human brain, and its role in

[Freesurfer] MP2RAGE recon-all

External Email - Use Caution Dear Freesurfer experts: I am having trouble processing with recon-all the file I obtain with presurfer from an MP2RAGE. I don’t know if you have any experience with this. The data I obtained from this

Re: [Freesurfer] Fw: cortical boundary and center of gravity

External Email - Use Caution If I understand correctly, you want to compute the distance between a given point (however you compute it) and the nearest(?) point on the white surface? On 7/28/2023 6:04 AM, alexandra.ko...@uksh.de wrote: External Email - Use Caution

Re: [Freesurfer] Grey Matter Under Segmentation

External Email - Use Caution Hello, The regions you have denoted with the cursor are not part of the cortex, and as such are not included in the pial/wm segmentation. The 'un-segmented' areas are part of the medial wall. This is not a completly exhaustive list, but these

Re: [Freesurfer] Longitudinal base error

External Email - Use Caution The argument to -tp should be the cross subject (run earlier with recon-all), not the input volume On 8/1/2023 4:58 AM, Bernis SÜTÇÜBAŞI wrote: External Email - Use Caution Hello FreeSurfer experts, I'm attempting to follow the

Re: [Freesurfer] mris_preproc error: cannot allocate memory

External Email - Use Caution That should be enough RAM. What is your command line? Can you send the log file? On 8/1/2023 7:52 AM, MANSSOUR Wassima wrote: External Email - Use Caution Hello FreeSurfer Developers, I'm conducting the *Surface Based Group Analysis* 

[Freesurfer] Registration open: FSL Course 2023 - Sept 11th-22nd

External Email - Use Caution Dear all, Registration is now open for FSL Course 2023, which will be held fully online, 11th - 22nd September 2023. You can find details and registration info here:

[Freesurfer] Longitudinal base error

External Email - Use Caution Hello FreeSurfer experts, I'm attempting to follow the longitudinal pipeline, as described on the longitudinal processing tutorial