Re: [Freesurfer] freeview (visualize pial and white surface)

2023-08-03 Thread Wang, Ruopeng
External Email - Use Caution Would it be possible to send us the two surface files? From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of DS Sent: Thursday, August 3, 2023 3:30:12 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer]

[Freesurfer] freeview (visualize pial and white surface)

2023-08-03 Thread DS
External Email - Use Caution Hi experts, I have a question about freeview. Recently, when I loaded lh.pial and lh.white at the same time, the freeview was suddenly aborted and reported the following error. ../mesa-22.0.3/src/mesa/vbo/vbo_attrib_tmp.h:234:_save_Vertex3fv:

Re: [Freesurfer] using synthsr with HCP Pipeline

2023-08-03 Thread Glasser, Matt
External Email - Use Caution That’s not easy to do out of the box, because you would need to run SynthSR before PreFreeSurfer, when normally you do the reverse. Not having T2w scans just means you would need to enable legacy mode options. I have some code that imports a

[Freesurfer] using synthsr with HCP Pipeline

2023-08-03 Thread KennethSPrice
External Email - Use Caution Hello all, I am currently struggling through the HCP Pipeline! I want to use clinical scans processed with synthsr in the HCP Pipeline. 1.) Is this even possible? 2.) Is there a way to get a T2 output with synthsr? 3.) In lieu of the HCP Pipeline,

Re: [Freesurfer] Fw: cortical boundary and center of gravity

2023-08-03 Thread alexandra.ko...@uksh.de
External Email - Use Caution Dear Douglas, If I have the distance between the nearest point on the white surface and the center of gravity ( this is d1), and the thickness of each point (d2), then I can sum d1+d2 and the result is what I need. Is it possible to extract d1

Re: [Freesurfer] [FreeSurfer] recon fix the surfaces of the brain

2023-08-03 Thread Fischl, Bruce R.,PHD
External Email - Use Caution Can you send me the voxel coordinates of a point that you think should be included but is not? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Krystal Xiwing Yau Sent: Thursday, August 3, 2023 12:25 AM To: Freesurfer support list