Re: [Freesurfer] freeview (visualize pial and white surface)

External Email - Use Caution Hi experts, I sent several images to troubleshot the problem by e-mail. But, I received an email saying that these files need approval from moderator. However, so far, I still did not get any reply from the moderator. I am not sure how to send you

Re: [Freesurfer] error in my software

External Email - Use Caution Hello Mikel, Can you send us more details like terminal output or perhaps screenshot from the terminal that shows the error ? - R. On Aug 4, 2023, at 15:54, MIKEL GARCÍA AGUIRRE mikel.gar...@alu.uclm.es wrote:External Email - Use CautionHello,I am

[Freesurfer] error in my software

External Email - Use Caution Hello, I am working with a MacBook M1 from 2020 and I downloaded two versions of Freesurfer. The first one was the 7.4.1 version, but I have also tried the 7.2.0 version. The problem that I have is that whenever I tried to upload one file, the

[Freesurfer] Errors Running tkmedit

External Email - Use Caution Hello, Our lab has been using Freesurfer 5.3 for it's ongoing longitudinal study. I attempted to quality check one of our brains using tkmedit - I usually don't have any issues following our pipeline or running the tool. This time I received this

Re: [Freesurfer] Is there an inverse function to mris_flatten?

External Email - Use Caution Hi Phillip The flattening preserves vertex correspondence between the flat maps and all our surfaces (for that hemisphere). So if you can map data onto the flattened patches, you should be able to look up the vertex index and use that to go from

[Freesurfer] Issue with mri_vol2surf nearest interpolation

External Email - Use Caution Good afternoon, We are encountering an issue with getting non-integer values (input file has all integers) when using the “nearest” interpolation method in mri_vol2surf. Here is the command we ran: mri_vol2surf --mov ${anatIn} --regheader ${REG}

[Freesurfer] Is there an inverse function to mris_flatten?

External Email - Use Caution Hello FreeSurfer team, I'm new to FreeSurfer and would greatly appreciate your help. My objective is to reverse the flattening process of mris_flatten. I successfully got flatmaps by using mris_flatten on "bert" inflated hemispheres with manual

Re: [Freesurfer] freeview (visualize pial and white surface)

External Email - Use Caution Hi expert, Yes, sure. I sent both lh.pial and lh.white files, but the automatic reply email showed "two files are being held until the list moderator can review it for approval". Hopefully, you will get both files soon. Please let me know if you did