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Dear FreeSurfer experts,
I have completed the processes of coregistration of FLAIR to T1 image for the
subject. As I ran samseg with lesion contrast, the following error message
occurred:
writing template transform to
/home/admin1/freesurfer/subj
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Hi Doug:
Thanks for your reply. I am trying to set the T1.nii.gz as 001.mgz and the
T2.nii.gz as 002.mgz. So will the following command work?
mri_convert t2.nii.gz --flair 002.mgz
or is it:
mri_convert --flair t2.nii,gz 002.mgz
Thanks,
Alan
On Su
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SVM is a segmentation/classification algorithm and does not give the
inference that the GLM gives. Not sure what other models you are talking
about
On 8/21/2023 9:28 AM, 林 耀云 wrote:
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Hi Freesurfer Team,
I have
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There is no way to do this. All the fsfast commands are going to expect
things to be in the fsfast directory structure.
On 8/11/2023 12:19 PM, Noah Lee wrote:
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Hello!
I am trying to run some freesurfer commands
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mri_glmfit-sim outputs several files that may be helpful. If you run it
with --help, you will get more info, but is this the final file you want?
csdbase.y.ocn.dat - this is a summary of the input (y) over each
cluster. It has a column for each cluster
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yea, this can be a big bookkeeping headache. I would suggest just
modeling the missed trials as an event in the par file. If some subjects
don't have a missed trial, then just take one of the unmissed ones and
call it missed. Not perfect, but it shoul
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Hi Freesurfer Team,
I have a question can’t understand. Why just uses general linear model to
analysis in Freesurfer? There are a lot of models such as nonlinear model, SVM
and others. Please help me answer. Thank you so much. Additionally, as attac
