[Freesurfer] lta_convert does not produce ITK transforms that are correctly applied by antsApplyTransforms

External Email - Use Caution Dear all, Hi for checking registration i used fsl applyxfm on an Image(1)(Called Image.nii ) with specific Registration Matrice (Which we suppose to receive when we apply registration Methods) and Generate the "fsl_resampled.nii.gz" (Note: Image Orien

Re: [Freesurfer] Follow up question on group analysis (mri_glmfit)

External Email - Use Caution Yes, that is all correct. There is a tutorial on the wiki. You can use multiple covariates. See https://secure-web.cisco.com/1RwswV5KTgyno813OwbYPsChep2vyOd84uZhtCymnh_LaEd8jFvwUJVQOhDIhz80oOjWByV0_OhjirTD8kxhoc823Lx4-TGmNolu55PXDVE4KUKR50Zc2OldUaoPuSu

Re: [Freesurfer] [FreeSurfer] regeneration of aseg.stats from manually edited aseg.mgz

External Email - Use Caution Ideally, you should have edited the aseg.presurf.mgz, then rerun recon-all starting just after the aseg. That said, if you edited the aseg.mgz and then re-ran that mri_segstats command, the stats should have changed. On 9/15/2023 4:05 AM, Krystal Xi

[Freesurfer] Native darwin_arm64 development build for silicon Macs

External Email - Use Caution  A native silicon Mac build (darwin_arm64) from the freesurfer development branch is currently available for download (along with the usual darwin_x86_64 Intel Mac build).  This means freeview and most binaries should run on current Macs with M1, M2,

Re: [Freesurfer] Unable to complete all the steps of recon-all

External Email - Use Caution Hi, I'm trying to complete my recon-all command. I'm currently working on Ubuntu 22 and processing the images from an exFAT drive. After digging a bit, I realised that symbolic links cannot be created on exFAT drives. I then came across another post