Re: [Freesurfer] Help (Freeview fails to launch)

2023-12-29 Thread Kiyotaka Nemoto
External Email - Use Caution Dear R, Thank you for the information. The deb package is useful so I agree with you. Only one point is that using deb cannot handle installing two different versions. Do you have any recommendation managing two (or more) different versions using deb

Re: [Freesurfer] Help (Freeview fails to launch)

2023-12-29 Thread fsbuild
External Email - Use Caution Depending upon the state of a machine, there is no guarantee a list of "required" packages will encompass everything that needs to be installed/updated, or that a manual install will work.So we neither recommend or support manual/piecemal installs,

Re: [Freesurfer] Help (Freeview fails to launch)

2023-12-29 Thread Kiyotaka Nemoto
External Email - Use Caution Dear Akira, I agree with R that installing FreeSurfer using the deb is preferred, but if you want to stick to tar.gz, below is the list of the packages to be installed when you install FreeSurfer using the deb package. So if you install these

Re: [Freesurfer] mri_easyreg error: No cortical labels found; does the segmentation include cortical parcels?

2023-12-29 Thread Huang, Yujing
It looks like there are some extra characters before '-flo_seg' flag. The command line is split into 2 lines. Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of r04458...@ntu.edu.tw Sent: Wednesday, December 27, 2023 4:02 AM To: freesurfer@nmr.mgh.harvard.edu Subject:

Re: [Freesurfer] recon all with optiBET brain mask

2023-12-29 Thread Huang, Yujing
This is from Freesurfer wiki - MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be

Re: [Freesurfer] Recon-all failing with pre-skullstripped input data (mri_em_register can't find brainmask.mgz)

2023-12-29 Thread James Hengenius
External Email - Use Caution Thanks for pointing that out! That seems to be working. Jim On Thu, Dec 28, 2023 at 6:53 PM Huang, Yujing wrote: > This is from Freesurfer wiki - >