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Dear Yujing,Thank you for your response. I attempted the command again as
follows:mris_convert -f $funcfile ${SUBJECTS_DIR}/fsaverage/surf/${hemi}.white
./$fname.gii
This time, no errors were reported. However, upon comparison, it appears that
the
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At this point, I think your best bet is to install and run the freesurfer
7..4.1 release from June 2023 which was tested with R2019b. Although The
MathWorks does not support R2019b on MacOS Sonoma, I think we tested the 7.4.1
release on BigSur,
Dear Joao,
I’ll defer to our software specialists, but another option may be trying the
Python version:
https://surfer.nmr.mgh.harvard.edu/fswiki/SubregionSegmentation
Cheers,
/E
--
Juan Eugenio Iglesias
http://www.jeiglesias.com
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of João
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Dear all,
I would appreciate your help in an issue I am having and one that I have not
found a reference to regarding Freesurfer. Basically, I have run all of the
longitudinal Freesurfer pipeline and I am now interested in running the
longitudinal
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Hello,
I am running freesurfer v7.3.2 reconall with -synthseg on a pediatric sample,
and for one specific subject I keep getting a lot of gray matter classified as
white matter, which leads to the ?h.white surfaces being too close to the pial
Hi Anna
The DK atlas (or DKT?) gets written into the aparc+aseg.mgz volume, but the DKT
parts of it only consist of cortex. The subcortical labels are the normal ones
(caudate, putamen, etc...)
Cheers
Bruce
From: Arkhipova Anna, MUDr.
Sent: Monday, January 29, 2024 10:21 AM
To: Fischl, Bruce
