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Hello together!
I’d like to share my attempt on providing minimal Docker image of the
FreeSurfer that is fully operational in terms of recon-all functionality.
Please see: https://hub.docker.com/r/alerokhin/freesurfer6
Compressed size is 732.6
ming…
>
>Hope that helps,
>Andrew Hoopes
>
>From: < freesurfer-boun...@nmr.mgh.harvard.edu > on behalf of Ерохин
>Александр < erohin_...@mail.ru >
>Reply-To: Ерохин Александр < erohin_...@mail.ru >, FS Help <
>freesurfer@nmr.mgh.harvard.edu >
>Date
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Hello together,
The FreeSurfer distribution takes 10G of the disk space in my local
installation. It has numerous tools, but it’s not modular, or at lest it’s very
hard to tell boundaries between modules.
E.g. /bin folder contains around 860
020, 19:26 +03:00 от Bruce Fischl
>:
>
>yes, careg is required. In general you should run things all the way to
>the end of recon-all as the surfaces are used to improve the accuracy of
>the aseg.
>
>cheers
>Bruce
>On Sun, 19 Apr 2020, Ерохин Александр wrote:
>
&
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Hello together,
Could you please suggest the most effective way (in terms of time) for
computation of statistics on segmented volumes from .nii source file?
So far I went though the following steps:
recon-all -autorecon1 -no-isrunning -subjid
