Alex
--
Alex Fornito
CJ Martin Post-Doctoral Fellow
Brain Mapping Unit
Department of Psychiatry
University of Cambridge
Downing Site
Downing St, Cambridge
UK CB2 3EB
Email:af...@cam.ac.uk
Phone:+44 (0) 1223 764670
Fax:+44 (0) 1223 336581
Australian Details:
Melb
this to something else?
Thanks for your help,
Alex
--
Alex Fornito
CJ Martin Post-Doctoral Fellow
Brain Mapping Unit
Department of Psychiatry
University of Cambridge
Downing Site
Downing St, Cambridge
UK CB2 3EB
Email:af...@cam.ac.uk
Phone:+44 (0) 1223 764670
Fax:+44 (0) 1223 3
uniform) parcellations of
> the surface.
>
> cheers,
> Bruce
> On Thu, 9 Apr 2009, Alex Fornito wrote:
>
>> Hi,
>> We're trying to create some customized annotations in matlab, and then write
>> them out to an .annot file.
>>
>> Some of these an
Hi,
I'm playing around with different ways of generating custom annotation files
using the fsaverage surface, and would like to estimate the surface area of
each ROI. I tried running mris_anatomical stats, but it seems to required
wm.mgz, which is not contained in the fsaverage directories (please
s you can use if you want, I think mris_info will print it out.
>
> cheers
> Bruce
>
>
> On Fri, 5 Jun 2009, Alex Fornito wrote:
>
>> Hi,
>> I'm playing around with different ways of generating custom annotation files
>> using the fsaverage surfac
r something, or you could run mri_annotation2label and run
> label_area on the individual labels.
>
> Do you really want the surface area on the average subject?
>
> On Sat, 6 Jun 2009, Alex Fornito wrote:
>
>> Thanks,
>> I did as you suggested, but got a different error t
No, sorry. What is the error?
On 09/06/2009 17:31, "Douglas N Greve" wrote:
> Does this workaround account for the error in the raw area unavoidable
> on an average surface? If not, are you aware of it and is it important
> for your analysis?
>
> doug
>
> A
Hi all,
I have a custom annot in fsaverage space that I would like to map to the
surface of each of my subjects. I have 2 questions about how mri_surf2surf
does this:
1 - Does it use the surface-based registration performed in autorecon2, or
is it a volume-based registration?
2 - If it is a volume
Hi all,
I've tried running mri_label2vol on a few different computers now and keep
encountering the same memory error. Can anyone provide suggestions as to how
to get around this problem? I've included the output from a run using linux
on a dual 3.05 GHz Xeon with 8GB ram below.
Thanks for your hel
o specify a different annot-table to
> match your labels.
>
> doug
>
> Alex Fornito wrote:
>> Hi all,
>> I've tried running mri_label2vol on a few different computers now and keep
>> encountering the same memory error. Can anyone provide suggestions as to how
>&g
On 20/10/2009 18:11, "Douglas N Greve" wrote:
>
> I just created a ribbon.mgz (link below). Copy this into fsaverage/mri
> and see if it works.
>
> doug
>
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ribbon.mgz
>
> Alex Fornito wrote:
again,
Alex
On 21/10/2009 12:27, "Alex Fornito" wrote:
> Hi again,
> After running the command, the output image seems to have the left hemi cortex
> parcellated, but the right is all assigned one intensity (2000). Is there
> something I'm missing? Outp
Hi all,
Sorry to keep pressing this issue, but I am really stuck and need to sort
this out before I can progress.
I have been generating some customised annotation files, generally with 500
or more ROIs. The parcellation is done on a per hemi basis, meaning that
there will not always be the same nu
Hi,
We've just installed version 3.05 for Mac and get the error below when
running -autorecon1. I've noticed this error has been posted to the list
a few times, but it always seems to have been resolved internally.
Any help is much appreciated.
Thanks,
Alex
Can't locate MNI/Startup.pm in @INC (
returns.
Is the mris_anatomical_stats volume estimate calculated on a
vertex-by-vertex basis?
Thanks,
Alex
Alex Fornito
JN Peters Research Fellow
Melbourne Neuropsychiatry Centre
National Neuroscience Facility
The University of Melbourne
Levels 2 & 3, 161 Barry St
Carlton South
oup_lh_thk-0001.label
Alex Fornito
JN Peters Research Fellow
Melbourne Neuropsychiatry Centre
Department of Psychiatry
The University of Melbourne
Postal address:
Melbourne Neuropsychiatry Centre
National Neuroscience Facility
Levels 2 & 3, 161 Barry St
Carlton South Vic 3053 Australia
Ph:
-ocp <*.mgh>
the output file *.sum can be opened in text editor and *.mgh can
be seen
using tksurfer. Check the link above link for more details (i just
followed that link when i did last month).
let me know if you get into more problems.
pratap
On 11/28/2007 07:43 PM, Alex Fornito
Hi,
I've just installed version 4.0.3 for leopard and can't open qdec.
I get the error below.
Any help is appreciated.
Alex
qdec &
[1] 956
[pspc83:MRI_data/freesurfer/subjects_cann] alexfornito% X Error of failed
request: BadRequest (invalid request code or no such operation)
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