[Freesurfer] DODS vs DOSS for correlation analysis

2016-03-28 Thread Cassandra Wannan
significant correlations using DOSS, however I do not want to report these if the analysis is not correct. Thanks, Cassie Cassandra Wannan *PhD Candidate/Research Assistant/Psychology Tutor* Melbourne Neuropsychiatry Centre 0433 339 839 cwan

Re: [Freesurfer] DODS vs DOSS for correlation analysis

2016-03-30 Thread Cassandra Wannan
Hi Doug, I'm using version 5.3. I had read about the bug but the release notes for 5.3 didn't mention not using DOSS in Qdec, so I thought the issue must have been resolved. If not, I'll let my colleagues know as I believe some of them are still using DOSS in Qdec. Cheers, Cassie ___

[Freesurfer] Different significant clusters: qdec vs mri_glmfit-sim

2016-04-13 Thread Cassandra Wannan
Hi Freesurfer experts, Qdec does not appear to allow me to automatically extract mean values for significant clusters for each participant, so I have been doing this using command line after running the original analysis in Qdec. However, I have found that there are some differences in the signifi

[Freesurfer] Hippocampal subfield segmentation with T1 and T2

2018-01-18 Thread Cassandra Wannan
Hi all, I've been trying to run the hippocampal subfield segmentation with T1 and T2 images, and haven't had much luck. I had previously run recon-all on all my scans in v5.3, but testing on one subject I re-ran recon-all with the additional T2 scan, and that seems to have run fine. However, when