Re: [Freesurfer] Use freeview to visualize white and pial surface

you still get the same errors, then that would help us reproduce it on the systems we have. - R. On Aug 8, 2023, at 22:42, DS wrote: External Email - Use Caution Hi expert, Thanks for discussing it. I really appreciate it. That's very helpful. I have forwarded this messag

Re: [Freesurfer] Use freeview to visualize white and pial surface

x86_64.rpm in that VM. Please note that it is easier to run Freeview in a VM compared to a container in order to view images. - R. On Aug 8, 2023, at 20:38, DS wrote: External Email - Use Caution Hi expert, Thanks for your reply. I have contacted our admin to fix the

Re: [Freesurfer] Use freeview to visualize white and pial surface

stall succeeds, then the path to FREESURFER_HOME you can try will be /usr/local/freesurfer followed by ../7.4.1 or ./7.4.1-1 depending upon your linux system. - R. On 8/8/23 11:22, DS (zky...@126.com) wrote: External Email - Use Caution I tried to load one su

Re: [Freesurfer] Use freeview to visualize white and pial surface

uopeng" wrote: External Email - Use Caution I don’t think this is the case since you can load 1 surface without problem. What if you load one surface from the command-line, then load the other one from the GUI? On Aug 8, 2023, at 9:45 AM, DS wrote: External

Re: [Freesurfer] Use freeview to visualize white and pial surface

ut problem. On Aug 7, 2023, at 8:11 PM, DS wrote: External Email - Use Caution Hi expert, Thanks for your tips. Here is the output after typing "mris_info lh.white" SURFACE INFO type: MRIS_TRIANGULAR_SURFACE=MRIS_ICO_

Re: [Freesurfer] Use freeview to visualize white and pial surface

er-boun...@nmr.mgh.harvard.edu On Behalf Of DS Sent: Monday, August 7, 2023 4:00 PM To: Freesurfer support list Subject: Re: [Freesurfer] Use freeview to visualize white and pial surface External Email - Use Caution Hi expert, I do not think it's related to RAM. When I try t

Re: [Freesurfer] Use freeview to visualize white and pial surface

-08-08 03:49:29, "Fischl, Bruce R.,PHD" wrote: External Email - Use Caution Maybe you are at the edge of how much ram you have in that machine? How much free memory do you have? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of DS Sent: Monday, August 7, 20

Re: [Freesurfer] Use freeview to visualize white and pial surface

at is your freeview command line/ From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of DS Sent: Monday, August 7, 2023 2:51 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Use freeview to visualize white and pial surface External Email - Use Caution

[Freesurfer] Use freeview to visualize white and pial surface

External Email - Use Caution I have a question about freeview. Recently, when I loaded lh.pial and lh.white at the same time, the freeview was suddenly aborted and reported the following error. ../mesa-22.0.3/src/mesa/vbo/vbo_attrib_tmp.h:234:_save_Vertex3fv: Assertion

Re: [Freesurfer] Bad skull stripping

:22:33, "Fischl, Bruce R.,PHD" wrote: External Email - Use Caution Hi Cain Have you tried using mri_synthstrip instead? Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of DS Sent: Sunday, August 6, 2023 3:34 PM To: freesurfer@nmr.mgh.h

[Freesurfer] Bad skull stripping

External Email - Use Caution Hi expert, I found an issue when I do skull stripping. I used the following command line. recon-all \ -skullstrip \ -s fs_output \ -clean-bm \ -wsthresh 100 But, I found too much brain tissue has been removed, particularly for the visual and

Re: [Freesurfer] freeview (visualize pial and white surface)

freesurfer-boun...@nmr.mgh.harvard.edu on behalf of DS Sent: Thursday, August 3, 2023 3:30:12 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] freeview (visualize pial and white surface) External Email - Use Caution Hi experts, I have a question about freeview

Re: [Freesurfer] freeview (visualize pial and white surface)

f you did not receive these files. Thank you so much. At 2023-08-04 04:10:42, "Wang, Ruopeng" wrote: External Email - Use Caution Would it be possible to send us the two surface files? From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of DS Sent

[Freesurfer] freeview (visualize pial and white surface)

External Email - Use Caution Hi experts, I have a question about freeview. Recently, when I loaded lh.pial and lh.white at the same time, the freeview was suddenly aborted and reported the following error. ../mesa-22.0.3/src/mesa/vbo/vbo_attrib_tmp.h:234:_save_Vertex3fv:

[Freesurfer] tksurfer question

External Email - Use Caution Dear experts, I want to use the tksurfer to show the .mgh file by command line. Based on the manual, I tried tksurfer fsaverage lh inflated But, there is no room to input the overlay .mgh file. Moreover, I did not find relevant info in the -tcl