Dear experts,
I updated FreeSurfer as a 5.3.0 version but have a problem about the
missing ribbon.mgz when running recon-all procedure.
I found the ftp address but couldn't find the mri_segstats.
(ftp:/surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats)
Could you let me know the
to uncomress it.
What format is it? Or maybe it's corrupted...
On Sat, 13 Oct 2012, EK Kim wrote:
Bruce, and other experts, thank you for your time :)
I'm now uploading the data folder (before cp and after cp) to the
freesurfer incoming directory.
We obtained the 3D-SPGR axial images using 3T GE
I uploaded the EK_test_new.tar file to the ftp incoming folder.
I think it might work.
Thank you for you time and consideration.
2012/10/15 EK Kim kse...@gmail.com
I've been struggling to upload the file to the ftp server, but failed in
several times.
Sorry for bothering you, but I
parameters and resolution? Also, I can't diagnose your problem from just
the volume I'll need the entire (tarred and gzipped) subject directory.
Finally, please cc the list on these emails so that others can help you!
Bruce
On Thu, 11 Oct 2012, EK Kim wrote:
I uploaded the files to transfer
. recon-all -autorecon2-cp
and this figure was made by a commnad line, [tkmedit wm.mgz -aux brain.mgz
-surfs].
Best,
EK.
2012/10/10 Bruce Fischl fis...@nmr.mgh.harvard.edu
what was the name of the file that you transferred?
On Wed, 10 Oct 2012, EK Kim wrote:
I already uploaded this problem 2
Dear freesurfers,
I wondered is it okay to analyze isotropic data which was converted to the
anisotropic one.
The original data has (0.390625, 0.390625, 1.5) mm size and (512, 512, 104)
voxels.
It obtained from 3T scanner.
I know the Freesurfer recommend isotropic data (1,1,1)mm.
Does it have
.
cheers
Bruce
On Fri, 4 May 2012, EK Kim wrote:
Dear freesurfers,
I wondered is it okay to analyze isotropic data which was converted to
the
anisotropic one.
The original data has (0.390625, 0.390625, 1.5) mm size and (512, 512,
104)
voxels.
It obtained from 3T scanner.
I know
convert was preprocessed or not.
How can I confirm the processes?
Sorry for bothering you.
Thank you in advance.
2012년 5월 4일 금요일에 Bruce Fischlfis...@nmr.mgh.harvard.edu님이 작성:
if you give it to recon-all it will convert it internally, so you don't
need to convert it yourself
On Fri, 4 May 2012, EK Kim
Yes I found it :)
Thank you for your help!
Sincerely,
EK.
2012/5/4 Bruce Fischl fis...@nmr.mgh.harvard.edu
run:
mri_info $SUBJECTS_DIR/$subject/mri/**orig.mgz
and you should see that it is 1mm isotropic
cheers
Bruce
On Fri, 4 May 2012, EK Kim wrote:
Thank you, but again I think
Hello, Freesurfers,
I got an error message when I trying to use recon-all function in
freesurfer
on the XUbuntu system installed on the VirtualBox on a Windows 7 machine.
I searched the e-mailing list but I can't find any answers.
My problem is related to the nu_correct and
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