I uploaded the EK_test_new.tar file to the ftp incoming folder. I think it might work. Thank you for you time and consideration.
2012/10/15 EK Kim <kse...@gmail.com> > I've been struggling to upload the file to the ftp server, but failed in > several times. > Sorry for bothering you, but I will send an e-mail when the uploading is > done. > > > Best, > > EK > 2012/10/14 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > >> I found EK_test.zip, but neither tar nor unzip knows how to uncomress it. >> What format is it? Or maybe it's corrupted... >> >> >> On Sat, 13 Oct 2012, EK Kim wrote: >> >> Bruce, and other experts, thank you for your time :) >>> >>> I'm now uploading the data folder (before cp and after cp) to the >>> freesurfer incoming directory. >>> >>> >>> We obtained the 3D-SPGR axial images using 3T GE system which have >>> 8HRBRAIN receiving coil. >>> Data acquisition matrix is 320-by192, FOV is 200-by-200. >>> >>> Other parameters; >>> slice thickness =1.5 >>> TR=5.924 >>> TE=1.472 >>> Flip angle: 20 >>> Inversion Time=400 >>> Imaging Frequency 127.88 >>> Percent Phase FOV =80 >>> >>> Sincerely, >>> >>> EK >>> >>> >>> >>> 2012/10/11 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >>> Hi EK >>> >>> that is a really low-contrast image. Can you tell me about the >>> acquisition parameters and resolution? Also, I can't >>> diagnose your problem from just the volume I'll need the entire >>> (tarred and gzipped) subject directory. Finally, >>> please cc the list on these emails so that others can help you! >>> >>> Bruce >>> On Thu, 11 Oct 2012, EK Kim wrote: >>> >>> I uploaded the files to transfer/incoming folder. >>> >>> >>> Best, >>> >>> EK >>> >>> 2012/10/11 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >>> If you upload the subject to our FTP site I will take >>> a look >>> Bruce >>> >>> >>> >>> On Oct 10, 2012, at 9:29 PM, EK Kim <kse...@gmail.com> >>> wrote: >>> >>> Thank you for your answer. >>> I'm not sure I understand your question right, >>> but I just processed the file using following procedures. >>> 1. recon-all -autorecon1 -nuintensitycor-3T (because mine was >>> 3T) >>> 2. skullstripping brain mask using gcuts >>> 3. adding control points (only on the left hemisphere) >>> 4. recon-all -autorecon2-cp >>> and this figure was made by a commnad line, [tkmedit wm.mgz >>> -aux >>> brain.mgz -surfs]. >>> Best, >>> EK. >>> >>> 2012/10/10 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >>> what was the name of the file that you transferred? >>> On Wed, 10 Oct 2012, EK Kim wrote: >>> >>> I already uploaded this problem 2 days >>> ago, reprocessing the subject to make >>> sure about control points. >>> However when I added the control points >>> to the left hemisphere, >>> the right hemisphere surface was changed >>> severely. >>> I used the command line, recon-all >>> -autorecon2-cp -s subjectID. >>> Could you tell me why does it occur and >>> how to deal with it? >>> >>> >>> Best, >>> >>> EK >>> >>> >>> >>> >>> The information in this e-mail is intended only for the >>> person to whom it is >>> addressed. If you believe this e-mail was sent to you in >>> error and the e-mail >>> contains patient information, please contact the Partners >>> Compliance HelpLine at >>> >>> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >>> If the e-mail was >>> sent to you in error >>> but does not contain patient information, please contact >>> the sender and properly >>> dispose of the e-mail. >>> >>> >>> ______________________________**_________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/** >>> freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> >>> >>> >>> >>> >
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