dwi.nii.gz
> /mnt/hgfs/linux_share/subjects/TB_480/dmri/data.nii.gz
>
> Can you please try it both ways and let me know if the former works on a
> computer where the latter doesn't?
>
> And yes, if you fix error #1 it'll fix error #2 as well.
>
> Thanks,
> a.y
>
>
>
>
Dear Freesurfer experts,
I upgraded to Freesurfer 5.3 from Freesurfer 5.1 (all of the preprocessing
has already been completed in Freesurfer 5.1) in order to run some new
functions of Tracula (I have also installed the latest Tracula update
(tracula.update.centos4_x86_64.5.3.2014_05_26).
I am
Dear Freesurfer expert,
I'm reposting this mail.
any suggestions?
Thank you
efrat
-- Forwarded message --
From: Efrat Kliper e.kli...@gmail.com
Date: Tue, Jun 9, 2015 at 8:11 AM
Subject: CNR in the hippocampus
To: freesurfer@nmr.mgh.harvard.edu
Dear Freesurfer expert,
I
*Dear Freesurfer experts,
**I have encountered the following error while running the tracula
**pre-processing command and was hoping you could help me understand how
**to correct this.*
*from the log file *
*INFO: input image orientation is LPS
INFO: input image determinant is 3.51562
Dear freeSurfer expert,
I am trying to perform whole brain functional connectivity analysis
Is there a wiki for resting state analysis? I have only found this wiki page
https://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialV5.1/FsFastPreProc
So far I have run the following commands:
Dear freesurfer expert,
We have preformed the full autorecon command using freesurfer and want to
view the results in Slicer,
When we load the pial surface onto slicer it doesn't seem to be coregister
to the original MR image,
how can we bring back the surface to the original native space or
Dear FreeSurfer expert,
I am using Freesurfer version 5.1.0. After I run the QA Tool and check my
data, I am getting 39 outliers or more for each subject. When I look at the
AsegMeans and DefaultAsegMeans files in the QATool library, i see that the
mean values in these file for each anatomical
Dear Freesurfer expert,
I am using Freesurfer version 5.1.0.
I am dealing with some problems with recon_checker command.
I cannot open the html file to see the figures. The command generates the
images but they are not saved.
It is written that:
*converting snapshots to tiff and making html
Dear Freesurfer expert,
I am using Freesurfer version 5.1.0.
After I ran the freesurfer recon-all -autorecon-all and checked the data
I saw that the skull wasn't removed as a whole (yet it is not part of the
pial or white matter margin).
I was wondering if it just doesn't look good or that
Dear FreeSurfer Users,
I have created a binary mask for the hippocampi and now i want to create
the
triangulated surfaces of the hippocampi?
An one know how to do it?
Thanks,
Efrat
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Freesurfer@nmr.mgh.harvard.edu
Dear FreeSurfers Users,
When i am using the dt_recon function to create adc map i get quite a lot
negative values,
dose anyone encounter this problem?
Thanks,
Efrat
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Dear FreeSurfer expert,
If I want to report on hippocampal volume in an article, should I report
the value as stated in the aseg.state table or should I normalize the value
to the eTICV ( i.e aseg value/eTICV )?
Thanks in advance
Efrat
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Freesurfer
Dear FreeSurfer expert,
I am currently working on FreeSurfer Version 4.5.0 and already performed an
analysis for approximately 200 subjects. Is there a way to change the
version that I am working on (4.5.0) to 5.0.1 without the need to run
recon-all again in the new version?
Thanks in advanced,
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