: [Freesurfer] Cortical thickness
You need to map them into the same space. You can use mris_apply_reg to map one
subject into the other or you can use mris_preproc to put them both into
fsaverage space
On 09/01/2017 10:29 AM, Esteban, Eva(GE Healthcare) wrote:
>
> Hello everyone,
>
>
Hello everyone,
I am trying to compare the difference in cortical thickness between two
subjects by overlaying the surfaces (lh.thickness and r rh.thickness) but -diff
doesn't seem to be doing the work. Does anyone know of any other commands which
could be useful for this?
Thank you!
Eva
___
Aug 2017, Esteban,
Eva(GE Healthcare) wrote:
>
> Hello everyone,
>
>
>
> I am trying to overlay a cortical thickness map onto a subject but when I try
> this command
>
>
>
> freeview -v good_output/mri/T1.mgz good_output/mri/wm.mgz
> go
Hello everyone,
I am trying to overlay a cortical thickness map onto a subject but when I try
this command
freeview -v good_output/mri/T1.mgz good_output/mri/wm.mgz
good_output/mri/brainmask.mgz good_output/mri/aseg.mgz:colormap=lut:opacity=0.2
-f good_output/surf/lh.thickness.fsaverage.mgh:ed
reshaping. If that works, then I'll edit the wiki
On 8/22/17 12:00 PM, Esteban, Eva(GE Healthcare) wrote:
Good afternoon,
I am new to Freesurfer and following the instructions to find out the Cortical
Thickness of a Volume-defined
ROI(http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThic
teban, Eva(GE Healthcare) wrote:
Good afternoon,
I am new to Freesurfer and following the instructions to find out the Cortical
Thickness of a Volume-defined
ROI(http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness),
everything goes well until step 4. Even if I try to use -reshape-f
Good afternoon,
I am new to Freesurfer and following the instructions to find out the Cortical
Thickness of a Volume-defined
ROI(http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness),
everything goes well until step 4. Even if I try to use -reshape-factor 7 as
suggested, it resha
