[Freesurfer] [TRACULA] how to setup with opposite phase-encoding

2024-02-07 Thread Fahad Hannan
or b0 pairs having opposite phase-encoding directions. I am not sure how to incorporate these into the configuration file. I can do it with using just the one b0 image, but I'd like to use the opposite phase-encoding as well. How would I go about this in the configuration file? Thanks, Fa

Re: [Freesurfer] mri_segstats dimension mistach

2023-07-06 Thread Fahad Hannan
30feGzUsjm9FM5CgiF3QW5mg-UlGeOlPUDGd9xvS0cKt60Wny7zkFNwJMyH553-KKUKzzeyOvA09Wnw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsAnat-to-NativeAnat> Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Fahad Hannan Sent: Monday, July 3, 2023 3:05 PM To: freesurfer@

[Freesurfer] mri_segstats dimension mistach

2023-07-03 Thread Fahad Hannan
External Email - Use Caution Hello, I'm trying to run the mri_segstats on different input volume. The input volume has the same dimensions as the original volume used to perform recon-all. However, when trying to use the following command: "mri_segstats --seg $SUBJECTS_DIR/P6V1