n 3/20/17 11:04 AM, Feilong Ma wrote:
>
> Hi FreeSurfer Experts,
>
> I was reading the document of preproc-sess, and it seems -per-run is
> recommended instead of -per-session. Here is the part:
>
>> -per-run
>> Motion correct and register using the middle time point of
Hi FreeSurfer Experts,
I was reading the document of preproc-sess, and it seems -per-run is
recommended instead of -per-session. Here is the part:
> -per-run
> Motion correct and register using the middle time point of each run.
> This is the option that you should use.
> -per-session
> Motion
> what happened in the ones that coreg was not the best? what is the nature
> of the data?
>
> On 3/17/17 6:39 PM, Feilong Ma wrote:
>
> Thanks, Doug! I've run bbregister with --init-best on my data comparing
> coreg, fsl, rr, and header; most of the times the choice is coreg
long, you do not need to use --init-best with bbregister anymore.
> It automatically uses --init-coreg (a remake of the spm coreg) which is
> the best as far a I can tell
>
>
> On 03/17/2017 02:47 PM, Feilong Ma wrote:
> > Hi FreeSurfer Developers,
> >
> > I'm having
l/24
>
> Feel free to download the fixed version:
>
> https://github.com/freesurfer/freesurfer/blob/dev/scripts/bbregister
>
>
>
>
> On 03/17/2017 02:47 PM, Feilong Ma wrote:
>
>> Hi FreeSurfer Developers,
>>
>> I'm having trouble using bbregister with the
Hi FreeSurfer Developers,
I'm having trouble using bbregister with the `--init-best` flag, a minimal
example and error message is like this:
$> bbregister --s ag00 --mov data/ag00/align/raiders/run00_ref.nii.gz
--init-best --bold --lta data/ag00/align/raiders/run00_ref_to_anat.lta
ERROR: cannot
