Awesome! Thanks for your help! Best, Feilong
On Fri, Mar 17, 2017 at 2:57 PM, Z K <zkauf...@nmr.mgh.harvard.edu> wrote: > It seems that a freesurfer user just submitted a pull request yesterday > that fixes this bug: > > https://github.com/freesurfer/freesurfer/pull/24 > > Feel free to download the fixed version: > > https://github.com/freesurfer/freesurfer/blob/dev/scripts/bbregister > > > > > On 03/17/2017 02:47 PM, Feilong Ma wrote: > >> Hi FreeSurfer Developers, >> >> I'm having trouble using bbregister with the `--init-best` flag, a >> minimal example and error message is like this: >> $> bbregister --s ag00 --mov data/ag00/align/raiders/run00_ref.nii.gz >> --init-best --bold --lta data/ag00/align/raiders/run00_ref_to_anat.lta >> ERROR: cannot spec an init method with --init-best >> >> It seems `InitCoreg` is set to 1 by default in the code of bbregister. >> Therefore, when `--init-best` is also set, it would always trigger the >> conflict detection and exit with the error message. >> >> Here are some related version information: >> - FreeSurfer version: >> freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c >> - bbregister version: $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve >> Exp $ >> - OS: CentOS Linux release 7.3.1611 (Core) >> >> Best, >> Feilong >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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