[Freesurfer] Recommendation for FreeSurfer BIDS derivatives?

External Email - Use Caution Hello In the BIDS-examples, we're trying to figure out whether we should use: 1) derivatives/freesurfer/sub-01/ses-01/ or 2) derivatives/freesurfer/sub-01_ses-01/ ? According to the FreeSurfer wiki, option #2 is recommended: https://secure-web.cisco.c

[Freesurfer] Option -contrasurfreg in FreeSurfer 7.3.2

External Email - Use Caution Dear colleagues, The step "contrasurfreg" is still documented for recon-all: https://secure-web.cisco.com/1sNdAy_WhD93Ud31GJEbFbtzD8zuHWnO6zQotNCGvSLXYBnsj70xmme0khmMoGGx6jFfavCRc26xIsEkjL7KPZUbJKuREIjf4QlNxdCxG-f4Wnh6mxDgIYiTMSZdVRD7vCIvRw54tQfezC39lG

[Freesurfer] Option -contrasurfreg in FreeSurfer 7.X

External Email - Use Caution Hello, Does anybody know what happened to the recon-all option -contrasurfreg. It is still documented, but recon-all crashes when trying to use it ("ERROR: Flag -contrasurfreg unrecognized.") How can we obtain the files lh.rh.sphere.reg and rh.lh.sphe

Re: [Freesurfer] Option -contrasurfreg in FreeSurfer 7.X

RURhHhXu7xTLvg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FXhemi > > On 11/7/2022 8:46 AM, Francois Tadel, Mr [Affiliate] wrote: >> Hello, >> >> Does anybody know what happened to the recon-all option -contrasurfreg. >> It is still documented, but recon-all cr