External Email - Use Caution Dear colleagues,
The step "contrasurfreg" is still documented for recon-all: https://secure-web.cisco.com/1sNdAy_WhD93Ud31GJEbFbtzD8zuHWnO6zQotNCGvSLXYBnsj70xmme0khmMoGGx6jFfavCRc26xIsEkjL7KPZUbJKuREIjf4QlNxdCxG-f4Wnh6mxDgIYiTMSZdVRD7vCIvRw54tQfezC39lG_BRe3jLX-lSZkRn9GVUxuIkeTEpykksKHk9DFt2WNWxZneXgpa9IyBsMhNej9PXk6n1B57_5Q3_ExRMaSwveOBx5vW95Ir5_hlU17fOZJYXnKP8_cmp2ZM8FnVwGIPkggtVggjfSHVoxKNoktuBViF7EWeVxfxD_bWzuNI-VboBFG7Ha4kj6Mx1XMXmU9YRb0FsDQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Frecon-all%23Step-wiseDirectives-1 (btw, this page has typos, in some places it's spelled "contasurfreg", with a missing R) But when executing recon-all, it doesn't accept the flag "-contrasurfreg": ========================================= ftadel@dogberry:~$ recon-all -all -contrasurfreg -subjid ICBM152_2022 ERROR: Flag -contrasurfreg unrecognized. -contrasurfreg Linux dogberry.bic.mni.mcgill.ca 5.4.185-i686-64-smp #1 SMP Thu Mar 17 21:53:59 EDT 2022 x86_64 x86_64 x86_64 GNU/Linux recon-all -s exited with ERRORS at Wed Nov 2 11:23:56 EDT 2022 For more details, see the log file To report a problem, see http://secure-web.cisco.com/1BjL8hP7NAz0x_d96RT5d6D0oOfiwH5zFjFw_sEeLHgXo3J00Mv4MB3pKamhnoOJi09NBCNjM9wQRyBJsuSd0M0ZsGVPPDliJkTSfgGehIoIV3C5s3xD06RBQ7750TNk4l_C3IJoeTOTlnsyrx8_5jsTnqAkcBMnmSaVUxe4zjugkVDPpRDWjmQ3TlaE6_IJp7m_A8ePNKvIIfXVc1p1s-6y0JEgSFVb6LDckUGE5NUe95mFLU2oUalgfCdK-xgB6JdcZvsUUTeM3UCFngTUjbR48GcnWkXSpwOgCBJLJ2hOyWJ1Q73M5GwC_D1xP5nWzMe7o30Iu35cZNeokjhcFMQ/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting ========================================= Am I missing something here? Thanks Francois _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
