[Freesurfer] mri_volcluster in single direction

2011-06-28 Thread G. William Chapman IV
direction, rather than total volume. I can't find anything in the help file on this, but I was wondering if there's possibly an undocumented flag in mri_volcluster that would do this? Thanks! - G. William Chapman IV ENG BME 2012 wchap...@bu.edu (617) 383-9042

Re: [Freesurfer] mri_convert PD

2011-06-23 Thread G. William Chapman IV
. William Chapman IV wrote: Hello all, I'm attempting to use mri_convert in order to match the slice size and thickness of T2 and PD images to the Freesurfer T1 images, after converting the norm.mgz and the T2/PD images to .nii.gz. For the T2 I'm using: mri_convert ${SUBJECT}/T2/T2.nii.gz -rl

Re: [Freesurfer] mri_convert PD

2011-06-23 Thread G. William Chapman IV
at 09:28, Bruce Fischl fis...@nmr.mgh.harvard.eduwrote: p.s. also, why are you specifying --like and -rl? On Thu, 23 Jun 2011, G. William Chapman IV wrote: The files have been dropped.https://www.nmr.mgh.** harvard.edu/facility/filedrop/**showgroup/24787/1/** d2a16267b417faa9da6f7cff3c3622

[Freesurfer] mri_convert PD

2011-06-22 Thread G. William Chapman IV
Hello all, I'm attempting to use mri_convert in order to match the slice size and thickness of T2 and PD images to the Freesurfer T1 images, after converting the norm.mgz and the T2/PD images to .nii.gz. For the T2 I'm using: mri_convert ${SUBJECT}/T2/T2.nii.gz -rl ${SUBJECT}/mri/norm.nii.gz