Hi all,
Is there a way to get freesurfer to annotate only certain selected
structures (e.g. basal ganglia). I suspect not, since the underlying model
involves spatial relationships between labels, but thought I would ask. I
am looking for any ways to speed up the annotation process. Thanks,
Hemant
) is
DERIVED\SECONDARY so maybe this file is the result of some non-standard
post-processing on your scanner.
doug
Hemant Bokil wrote:
I am trying to convert some dicom slices to mgz but am getting errors.
From the errors it appears that mri_convert is looking for some metadata
from the dicom. If you upload the dicom volume to our file drop,
I'll take a look. filedrop url is at the end of this email.
doug
Hemant Bokil wrote:
Hi Bruce,
Thanks very much for your prompt reply. I am puzzled that freesurfer
doesn't get the direction cosines. Which fields is it looking
Hello,
I had posted this question earlier but no one picked it up so I am trying
again. Briefly, I have been having difficulties with the very first step of
the recon-all pipeline, namely, in conversion of my dicom datasets to
freesurfer's mgz format. The error message (attached below) suggests
On Fri, 10 Feb 2012, Hemant Bokil wrote:
Hello,
I had posted this question earlier but no one picked it up so I am trying
again. Briefly, I have been having difficulties with the very first step
of
the recon-all pipeline, namely, in conversion of my dicom datasets to
freesurfer's mgz format
-centos4_x86_64/
i dont know if they will work for you though.
n.
On Mon, 2011-10-31 at 12:29 -0400, R Edgar wrote:
On Mon, Oct 31, 2011 at 11:32 AM, Hemant Bokil hemantbo...@gmail.com
wrote:
There was another thread a while back on the freesurfer website: A user
reported a similar
. if it was mri_em_register_cuda or
mri_ca_register_cuda, then it would appear that it is attempting to use
a function not supported by compute capability 1.0, which means your
card is not supported.
n.
On Mon, 2011-10-31 at 14:01 -0400, Hemant Bokil wrote:
Hi Nick,
Thanks for generating those files. The code
/FreeSurferSubjects/209/scripts/recon-all.log
To report a problem, see
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
On Tue, Oct 25, 2011 at 8:41 AM, R Edgar freesurfer@gmail.com wrote:
On Mon, Oct 24, 2011 at 9:28 PM, Hemant Bokil hemantbo...@gmail.com
wrote:
Thanks for the response
Hi all,
Here are the details of my freesurfer and linux installations
FREESURFER_HOME: /usr/local/freesurfer
Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
RedHat release: CentOS Linux release 6.0 (Final)
Kernel info: Linux 2.6.32-71.29.1.el6.x86_64 x86_64
I successfully ran
@gmail.com wrote:
On Mon, Oct 24, 2011 at 3:36 PM, Hemant Bokil hemantbo...@gmail.com
wrote:
Driver : 4.10
Runtime : 3.20
My best guess would be this mismatch causing a problem. It shouldn't
in theory, but...
Richard
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