Re: [Freesurfer] Cortical Thickness of Hippocampus subfields

2017-08-29 Thread Iman Aganj
Hi Vasudev, We don't have a direct way to measure the subfield thickness. We have tried a volumetric method to compute the thickness from the subfield masks though (http://nmr.mgh.harvard.edu/~koen/IglesiasNI2014.pdf , the "Experimental setup" section). It requires an isotropic-voxel soft

Re: [Freesurfer] Hippocampus subfield

2017-08-10 Thread Iman Aganj
Hi Ariel, I second Bruce; we don't have a pipeline to directly measure the subfield thickness. We have, however, tried an indirect volumetric method to compute the thickness (http://nmr.mgh.harvard.edu/~koen/IglesiasNI2014.pdf, the "Experimental setup" section). It requires a (preferably soft)

[Freesurfer] Matlab packages

2017-04-17 Thread Iman Aganj
hough> These are first releases. I highly appreciate any feedback. Best regards, Iman Aganj Assistant Professor of Radiology Harvard Medical School Assistant in Neuroscience Athinoula A. Martinos Center for Biomedical Imaging

RE: [Freesurfer] FreeSurfer on SUN Linux machines

2008-01-18 Thread Iman Aganj
Dear Nick, I think it is Solaris. Tcsh is installed, and I am not quite sure about the processor. Thanks, Iman -Original Message- From: Nick Schmansky [mailto:[EMAIL PROTECTED] Sent: Thursday, January 17, 2008 9:49 PM To: Iman Aganj Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re

[Freesurfer] FreeSurfer on SUN Linux machines

2008-01-17 Thread Iman Aganj
Hello everybody, I am trying to install FreeSurfer on SUN Linux machines, and I am not sure which platform to choose. I have already tried CentOS 4, but when I try for example tkmedit bert orig.mgz, I get the Invalid argument error. I will appreciate any help. Thanks a lot. Best, Iman