Re: [Freesurfer] Using registration.dat to register a dataset

2017-04-20 Thread Jacobson, Aaron
when using mri_vol2vol or mri_vol2surf, spec the unusual data set as the --mov but pass the bbregister registration to the --reg flag. On 04/20/2017 11:41 AM, Jacobson, Aaron wrote: > Absolutely, thanks for looking into this. > > I have 3 datasets: > >

Re: [Freesurfer] Using registration.dat to register a dataset

2017-04-20 Thread Jacobson, Aaron
for Functional MRI 9500 Gilman Drive La Jolla CA 92093-0677 On 4/20/17, 8:09 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N Greve" wrote: I don't know what you are trying to do. Can you elaborate? On 04/19/2017 07:26 PM, Jacobs

[Freesurfer] Using registration.dat to register a dataset

2017-04-19 Thread Jacobson, Aaron
Hello, I am new to freesurfer. I have been looking for an answer to this issue for days. I ran bbregister to align a dti scan to a t1 struc. It worked beautifully. I am trying to register a very abnormal looking dataset to the t1 using the registration parameters created during the first bbre