--out outpufile
Thank you for taking the time to read this email, I sincerely appreciate it.
Best,
Jennifer Legault
Ph.D candidate, Neuroscience
Brain, Language, and Computation Lab
The Pennsylvania State University
--
Jennifer Legault
Ph.D candidate, Neuroscience
Brain, Language, and Computation
Hi Martin,
Thank you for your help and clarifications. I did run the *_to_table
commands and now my LME analyses are running smoothly.
Best,
Jennifer Legault
On Mon, Mar 9, 2015 at 11:35 AM, Martin Reuter
wrote:
> Hi Jennifer,
>
> if you are interested in volumes from the stats
/Contrast_math_monly_EnglishParityRT_a_g_TIV.txt
--surf fsaverage rh --cortex --glmdir
rh.mono_EnglishParityRT_age_gender_TIV_100.glmdir
2. The FSGD file (if using one)
3. And the design matrix above
I am also attaching the FSGD file.
Best,
Jennifer Legault
should take the
demeaned x 100 covariates and divide them by the standard deviation? Or
would it be better to take regular demeaned values and divide them by the
standard deviation?
Best,
Jennifer Legault
On Mon, Jul 18, 2016 at 12:43 PM, Douglas N Greve wrote:
> This is almost surel
x27;t create file
/gpfs/home/jtl190/work/structurals/fsaverage/surf/rh.rh_time_cluster.w
Permission denied
Thank you for taking the time to read this email.
Sincerely,
Jennifer Legault
--
Jennifer Legault
Ph.D candidate, Neuroscience
Brain, Language, and Computation Lab
The Pennsylvania
On Wed, Feb 10, 2016 at 1:41 PM, Douglas N Greve
wrote:
> Try specifying the full path to the output
>
> On 02/10/2016 12:59 PM, Jennifer Legault wrote:
> > Dear experts,
> >
> > I am trying to use the cluster thresholding command for my freesurfer
> > LME
I see the clusterwise P value, like it is shown here
<https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysisClusterSummary>
?
Best,
Jen
On Wed, Feb 10, 2016 at 1:50 PM, Douglas N Greve
wrote:
> I meant for the output files, so the --o in particular
>
> On 02/10/2016 01:47 P
the sign of the contrast (or abs). Then the relevant output
> will be the --sum. You can run it with --help to get more info.
>
>
> On 2/10/16 5:11 PM, Jennifer Legault wrote:
>
> Thank you very much for your help! I still received a "cannot read file
> type" error
rected map (a sig.cluster.mgh file) as
they do for the Clusterwise Correction for Multiple Comparisons tutorial
here <https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis>?
Best,
Jen
On Thu, Feb 11, 2016 at 11:39 AM, Douglas N Greve wrote:
>
>
> On 02/11/2016 11:19 A
ing it in mri_glmfit with --osgm just to get the FWHM out
> of it.
>
> You should be able to output a .mgh file instead of a .w file
>
>
> On 02/11/2016 01:07 PM, Jennifer Legault wrote:
> > That's very useful, thank you. In terms of FWHM, I am examining gray
> > m
rc and aseg. * Currently I can only view the
aparc results for each of the hemispheres separately (and I haven't found a
way to visualize the aseg data).
Thank you for taking the time to read this email.
Best,
Jennifer Legault
Ph.D candidate, Neuroscience
Brain, Language, and Computation Lab
The Pe
; aseg data?
>
> On 04/01/2016 10:46 AM, Jennifer Legault wrote:
> > Dear Freesurfer Experts,
> >
> > I have run my participants' longitudinal sMRI data through the
> > preprocessing longitudinal pipeline, ran the LME multivariate
> > analysis, cluster-th
N Greve
wrote:
>
>
> On 04/01/2016 04:44 PM, Jennifer Legault wrote:
>> Hi Doug,
>>
>> Thanks for your quick response! When running the LME mass univariate
>> analysis, I am assuming this also includes subcortical structures,
>> correct?
> Which proces
t;done the cluster-thresholding for the aparc
> data"
>
> The aparc data is an ROI and so you should not have (could not have)
> done clusterwise thresholding (?)
>
> On 04/08/2016 12:57 PM, Jennifer Legault wrote:
>> Hi Doug,
>>
>> I'm currently runnin
the .sig files from
the LME analyses, given that these are structural MRI data? I've only ever
seen these analyses being done with fMRI data.
Thank you for taking the time to read this email.
Best,
Jennifer Legault
--
Jennifer Legault
Ph.D candidate, Neuroscience
Brain, Language, and Computa
extra spaces at the end of lines, I still get
this error.
I am attaching one such file here. Any feedback would be greatly
appreciated.
Best,
Jen
--
Jennifer Legault
PhD, Neuroscience
Postdoctoral Scholar
Language Acquisition and Brain Lab
University of Delaware
GroupDescriptorFile 1
Title
x
Nsubjects)?
Thanks for all your help!
Best,
Jen
--
Jennifer Legault
PhD, Neuroscience
Postdoctoral Scholar
Language Acquisition and Brain Lab
University of Delaware
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https
ask). Are there any recommendations
for steps I should take to make sure I'm only searching for regions inside
the mask?
Best,
Jen
--
Jennifer Legault
PhD, Neuroscience
Postdoctoral Scholar
Language Acquisition and Brain Lab
University of Delaware
___
Freesurfe
External Email - Use Caution
Thank you, that worked perfectly!
Best,
Jen
On Wed, Jun 26, 2019 at 5:27 PM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
> Try running it without --cortex
>
> On 6/26/19 4:57 PM, Jennifer Legault wrote:
> >
>
19 matches
Mail list logo