Dec 5, 2019, 18:36 Greve, Douglas N.,Ph.D.
wrote:
> If your WM volume is not conformed, you will need to conform it with
> mri_convert yourwm.mgz --conform wm.mgz
>
>
> On 12/5/19 4:24 AM, Jordi Huguet wrote:
> >
> > External Email - Use Caution
> >
>
e T1w images) are 320 rows x 320 columns
in 240 frames. Seems like FreeSurfer expects them to be cubic, correct?
Would that fix the problem if I add 80 frames of zeroes (or ones) to my
volumes? Any other ideas of what I might be doing wrong?
Regards,
Jordi
On Thu, Nov 28, 2019 at 8:47 AM Jordi Huguet
then run recon-all -s FOO -all
>
>
> On 11/27/2019 12:39 PM, Jordi Huguet wrote:
>
> External Email - Use Caution
> Hi Bruce,
>
> Many thanks for your reply.
>
> I understand from your answer that it could be done as follows (I am not
> an expert in Fr
etain them
>
> cheers
> Bruce
>
>
> On Tue, 26 Nov 2019, Jordi Huguet wrote:
>
> >
> > External Email - Use Caution
> >
> > Hi there,
> > I wonder if its somehow possible to feed FreeSurfer's recon-all with
> pre-existing segm
FreeSurfer's WM segmentation output
is not optimal so I am looking for alternatives to improve the final
results on such specific cases without requiring any manual intervention.
Any comments, examples or shared reflections on this regard are kindly
welcome.
Thanks in a
