Re: [Freesurfer] Creating group average ROI

2013-11-05 Thread Miggy Chuapoco
d some how make one group average ROI with these labels. Thanks, Miggy On Mon, Nov 4, 2013 at 5:52 PM, Bruce Fischl wrote: > Hi Miggy > > Are the ROIs on different subjects? Do you have surfaces reconstructed for > each of them? > cheers > Bruce > > > > On Mon, 4

[Freesurfer] Creating group average ROI

2013-11-04 Thread Miggy Chuapoco
Hi all, We have ROIs (defined in mrVista) that we converted to label files and would like to now make an average ROI. Does a pipeline exist that will help us create an average ROI composed of these label files. We were thinking of using mri_label2label to register the ROIs to a common surface but

Re: [Freesurfer] Improving the accuracy of average surfaces made from make_average_subject

2013-09-04 Thread Miggy Chuapoco
.pdf<http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/pdf/nihms213933.pdf> > > > and yes, I guess you could edit the ribbon.mgz and then convert it back to > wm.mgz. You'll need to make sure that the "on" edits are turned to 255 and > the "off" ones to 1 (no

[Freesurfer] Improving the accuracy of average surfaces made from make_average_subject

2013-09-04 Thread Miggy Chuapoco
an be considered as an "anchor" during the averaging process? Thanks and regards, Miggy Chuapoco ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this

[Freesurfer] Using edited ribbon.mgz in make_average_subject

2013-08-30 Thread Miggy Chuapoco
m.mgz file from the edited ribbon file and run -autorecon2-wm in order to recreate the surface and curvature files with the fixed segmentation, but I have yet to find a way to do this. Does anyone know if this is possible of if there is a way around this? Thanks, Migg