ualization,
> ie, it has little or no scientific value
>
>
>
>
>
> On 9/24/15 6:25 PM, Mohammed Goryawala wrote:
>
> Hello FreeSurfer Experts,
>
> This question has been asked before by someone and I am looking to do
> something similar.
>
> *If t
wmparc.mgz*
*I am also wondering if there is a way to get wmparc.mgz for the fsaverage
subject.*
*Thanks*
*Mohammed Goryawala, PhD*
*University of Miami,*
*Department of Radiology*
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(fspec,[],[],headeronly);
Error in
corticalGMConnectivityMatrixFreeSurfer
(line 6)
mri = MRIread(MRI_Filename);
Thanks
Mohammed Goryawala, PhD
University of Miami
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Hello FreeSurfer Experts,
I want to zero out all those voxels from my T1 MRI which are not part of
the cortex preferably in the native space.
I have run the recon-all on the subject.
Any help will be great.
Thanks
Mohammed Goryawala, PhD
University of Miami
Miller School of Medicine
.
doug
On 10/22/2014 04:50 PM, Mohammed Goryawala wrote:
Hello FreeSurfer Experts,
Is it possible to estimate the sulcal CSF volume in Freesurfer
processing? If not directly are there any indirect means that can give
me an estimate?
Thank you
Mohammed Goryawala, PhD
Department
, Mohammed Goryawala wrote:
Thanks Doug.
I was looking at a paper ARANGO, C., MCMAHON, R. P., LEFKOWITZ, D.
M., PEARLSON, G., KIRKPATRICK, B. BUCHANAN, R. W. 2008. Patterns of
cranial, brain and sulcal CSF volumes in male and female deficit and
nondeficit patients with schizophrenia
Hello FreeSurfer Experts,
Is it possible to estimate the sulcal CSF volume in Freesurfer processing?
If not directly are there any indirect means that can give me an estimate?
Thank you
Mohammed Goryawala, PhD
Department of Radiology
Miller School of Medicine, University of Miami
Hello All,
I am doing a study and I have determined some regionals volumes in the
Aparc and Aseg files which are significant.
I would like to show these in Freeview while hiding the other insignificant
ones. Please advice if its possible in Freeview.
Thank you
Mohammed Goryawala, PhD
accurately. They could also be lacunae and
not vessels.
cheers
Bruce
On Tue, 19 Aug 2014, Mohammed Goryawala wrote:
Hello Freesurfer experts,
In a study I found significant differences in the volume of the left and
right vessels of the freesurfer atlas.
I wanted to know what regions
Hello Freesurfer experts,
In a study I found significant differences in the volume of the left and
right vessels of the freesurfer atlas.
I wanted to know what regions are included in that ROI and if there are any
known functions of these regions.
Thank you
Mohammed Goryawala, PhD
Miller
Thanks Doug.
On Aug 1, 2014 4:16 PM, Douglas N Greve gr...@nmr.mgh.harvard.edu wrote:
On 07/31/2014 03:16 PM, Mohammed Goryawala wrote:
Hello All,
I have some questions related to the qdec analysis I have run.
1. On running the qdec I see that FWHM is an input which changes
cluster
, on completion of the qdec analysis I want to export the
clusters created by the qdec analysis into a volumetric file (which I can
later convert to .nii). Please also suggest a way that would let me only
export clusters above a particular size threshold.
Thank you very much in advance.
Mohammed Goryawala
line.
Error loading the data table.
As you see I have a 'gender.levels' file in the same directory as the data
file and it reads it above. I still get the error.
I am new to QDEC and any help would be appreciated.
Thank you
Mohammed
and
level files? If you created them under windows, then that could be the
problem. If not, post your qdec.table.dat file and the gender.level file
and I'll take a look
On 06/23/2014 01:33 PM, Mohammed Goryawala wrote:
Hello FreeSurfer Experts,
I am trying to run QDEC for a group
Hello,
I am reposting this question since I have not received any feedback with
this issue.
I am interested in understanding if tumor segmentation can be carried out
using FreeSurfer. On examining the stats file we do see a tumor volume
reported. I was wondering how this is calculated.
Thanks
Bruce
On Wed, 23 Apr
2014, Mohammed Goryawala wrote:
Hello,
I am reposting this question since I have not received any feedback with
this issue.
I am interested in understanding if tumor segmentation can be carried out
using FreeSurfer. On examining the stats file we do see a tumor
Hello FreeSurfer Experts,
On review of stats file in FreeSurfer a tumor volume is reported. How is
tumor segmentation achieved by FreeSurfer?
Thank you
Mohammed Goryawala, PhD
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Hi,
A follow up question pertaining to this issue for me is how good is the
measure of the ICV when dealing with subjects having prior resections or
significant atrophy. I am using FreeSurfer v5.1.
Thank you
M. Goryawala
Post-Doctoral Associate
Florida International University
Miami, FL
On
Hello FreeSurfer experts,
I want to export the white matter volumes from the wmparc stats file to a
table. I cannot find the information on the wiki page.
Thanks for your help.
Dr. Mohammed Goryawala
Center for Advanced Technology and Education
Miami, Florida
: No such file or directory
Please let me know a solution to fix this issue.
Thank you for all you help.
Mohammed Goryawala
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