in the wrong orientation
Freeview by default will display the image in its original pixel space, without
re-sampling. You can try the -r flag to enable the resampling like this:
freeview foo.mgz -r -cubic
Ruopeng
On Feb 27, 2023, at 7:04 AM, Nathan Kindred (PGR)
mailto:n.kindr...@newcastle.ac.uk
External Email - Use Caution
Hi,
When I am displaying certain images in freeview the orientation does not match
what is displayed in both orient_mri and SPM. The coronal and horizontal views
seems to be okay but the midsagittal view is often wrong with the front of the
brain
to my command line?
Thank you,
Nathan
From: Huang, Yujing
Date: Wednesday, 26 October 2022 at 18:38
To: Nathan Kindred (PGR)
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] Issue with rotation during longitudinal base creation
⚠ External sender. Take care when opening links
External Email - Use Caution
Hi,
I have been processing longitudinal data using the longitudinal processing
stream but for some subjects I am having getting this error when creating the
base:
Input rotation's max deviation from rotation is: 0.000258493
MyMatrix::RotationMean
External Email - Use Caution
Hi,
I have been using DenoiseImage from ANTs during pre-processing (DenoiseImage -i
T1.nii -o denoised.nii.gz -v), however for some scans I am having an issue
where this step is changing the scan orientation.
The scans appear shifted so they now no
External Email - Use Caution
Hi Isabelle,
It’s been a couple of years since I ran FreeSurfer on a Mac, but I also have
had this issue before and it was due to the macOS. I don’t know if anything has
changed recently but if not then the only solution would be to try to install
6sdata%3D0ejbAPnogyKL0%252FkmGEBUrBLIWh9a%252F%252Bd%252FGtlAzVEfKJY%253D%26reserved%3D0>
>
> Von: freesurfer-boun...@nmr.mgh.harvard.edu
> im Auftrag von Nathan Kindred (PGR)
>
> Gesendet: Freitag, 21. Januar 2022 18:18:14
> An: Freesurfer support list
: freesurfer-boun...@nmr.mgh.harvard.edu
im Auftrag von Nathan Kindred (PGR)
Gesendet: Mittwoch, 19. Januar 2022 14:00:23
An: Freesurfer support list
Betreff: Re: [Freesurfer] Using SPM segmentations in FreeSurfer
External Email - Use Caution
Hi Falk,
Thank you for the response!
I have
von Nathan Kindred (PGR)
Gesendet: Mittwoch, 19. Januar 2022 13:29:46
An: freesurfer@nmr.mgh.harvard.edu
Betreff: [Freesurfer] Using SPM segmentations in FreeSurfer
External Email - Use Caution
Hi,
I have been trying to incorporate segmentation files from SPM into FreeSurfer
to improve
External Email - Use Caution
Hi,
I have been trying to incorporate segmentation files from SPM into FreeSurfer
to improve the surfaces, but I am not sure if I am going about it in the right
way. I have been replacing the wm.mgz file with a file from SPM and then
running
10 matches
Mail list logo
