Re: [Freesurfer] bug: freeview's "configure overlay" window frozen (Ubuntu18 in wsl2 on Windows 11)

er dev consider having a look at this WSLg thing? Cheers! Sébastien From: Sebastien Proulx Sent: March 16, 2022 9:10 PM To: rwa...@mgh.harvard.edu Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] bug: freeview's "configure overlay" window frozen (Ubuntu18 in wsl2 on Window

Re: [Freesurfer] bug: freeview's "configure overlay" window frozen (Ubuntu18 in wsl2 on Windows 11)

External Email - Use Caution Thanks for the tip Ruopeng! Just tried MobaXterm. Nice piece of software! I had to enable hardware acceleration (mobaXterm -> settings -> X11 -> OpenGL acceleration -> Hardware) for freeview to work at all, but it worked-now the configure overlay wi

Re: [Freesurfer] bug: freeview's "configure overlay" window frozen (Ubuntu18 in wsl2 on Windows 11)

.1-microsoft-standard-WSL2 -windows is Windows 11 Pro, version 21H2, build 22000.556 Thanks for any help! Sebastien From: Sebastien Proulx Sent: March 14, 2022 11:19 AM To: freesurfer@nmr.mgh.harvard.edu Subject: bug: freeview's "configure overlay" window frozen (Ubuntu18 in wsl2 on Window

[Freesurfer] bug: freeview's "configure overlay" window frozen (Ubuntu18 in wsl2 on Windows 11)

External Email - Use Caution Dear Freesurfers, I just installed Freesurfer (freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b) on Ubuntu (Ubuntu 18.04.6 LTS) running in Windows 11's wsl2. So far Freeview is running fine-I can load volumes and surfaces, and add an overlay

[Freesurfer] custom lut for surface overlay in freeview

External Email - Use Caution Hello, Is it possible to use my own lookup table for surface overlays in Freeview? I could not find it from the GUI and in terminal using :overlay=someOverlay.mgh:colormap=someCustomLUT.txt did not work (the :colormap argument is not recognized).

Re: [Freesurfer] mri_compute_volume_fractions not filling some sulci properly

t I am talking about as much as I hope it is just a silly mistake on my side :-P Thanks a lot again for your help! Sébastien -Original Message- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Friday, September 11, 2015 12:21 PM To: Sebastien Proulx Cc: freesurfer@nmr.mgh.harva

Re: [Freesurfer] mri_compute_volume_fractions not filling some sulci properly

To: Sebastien Proulx Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] mri_compute_volume_fractions not filling some sulci properly there aren't really any workarounds other than using a machine with more ram. Otherwise you can reduce the resolution. Maybe try -r 0. Bruce O

Re: [Freesurfer] mri_compute_volume_fractions not filling some sulci properly

- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Thursday, September 10, 2015 10:15 AM To: Sebastien Proulx Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] mri_compute_volume_fractions not filling some sulci properly presumably you mean GB, not MB? That's not enoug

[Freesurfer] bbregister with label

Quick question : When using --label with bbregister, does the specified label file mask in or out (is the the voxels that are out or in of the label file that are excluded from the analysis)? Thanks a lot!! Sebastien ___ Freesurfer mailing list Freesu

[Freesurfer] mri_compute_volume_fractions not filling some sulci properly

Hello Freesurfers, I have been using mri_compute_volume_fractions for a while and I just noticed something weird. Some clearly csf pixels (sometime very large groups) are not filled in the *.csf.mgz image mri_compute_volume_fractions produces The first following figure shows a posterior coronal

[Freesurfer] mri_compute_volume_fractions with displacement map

Hello Freesurfer, I am trying to obtain csf, wm and gm tissue volume fraction maps that matches my distorted high-resolution EPIs. Is it possible to input a displacement map to the mri_compute_volume_fractions command, such that the surfaces will be deformed before computing the csf, wm and gm