[Freesurfer] normal vector projection

--mov mri/orig.mgz --s xDS --reg rrr.dat --dof 12 --tmp ./tmp/ mri_surf2surf --s xDS --hemi lh --sval-nxyz pial --tval ./pl_100.mgz mri_surf2vol --surfval pl_100.mgz --hemi lh --surf pial --volreg rrr.dat --outvol pln_pribbon.mgz --fillribbon --template mri/orig.mgz Thank in advance, Seok Lew

Re: [Freesurfer] normal vector in gm

is the file created by registering your orig.mgz to the mni152 > brain (assuming you are using the 152). You can create this > registration file with the mni152reg script. > > doug > > Seok Lew wrote: >> Thanks, first of all. >> >> I tried with the following

Re: [Freesurfer] normal vector in gm

ave 3- > frame, one for each component in the normal. Then use mri_surf2vol > to stuff this back into a volume. > > doug > > Seok Lew wrote: >> Hello users, >> >> My colleagues and I are trying to create a gray matter electric >> conduction mod

[Freesurfer] normal vector in gm

Hello users, My colleagues and I are trying to create a gray matter electric conduction model where a preferable conduction direction is aligned with the normal direction induced from the pial and white surface normals. Freesurfer reconstruction already gives pial and white matter surface

[Freesurfer] transform to original mri

Dear all, I am trying to transform the reconstructed surface like rh.pial into the original mri's (like 001.mgz) coordinate. I found some matrices in the ./transform directory, but not sure of which one (or a set of matrices) would do the transform? Seok s...@nmr.mgh.harvard.edu ___

[Freesurfer] MRIread and MRIwrite

e same src format error. Anyone know what went wrong ? Thanks, Seok Lew, Ph.D. MEG Core Laboratory Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Harvard Medical School s...@nmr.mgh.harvard.edu ___ Freesurfer ma