Re: [Freesurfer] Create translucent brain volume and save as matlab figure file

2019-12-15 Thread Sparsh Jain
External Email - Use Caution Thanks! I will wait for his response. Sparsh On Fri, Dec 13, 2019 at 2:14 PM Bruce Fischl wrote: > Hi Sparsh > > probably easiest to do with a surface, but I defer to Ruopeng > > cheers > Bruce > On Fri, 13 Dec >

Re: [Freesurfer] Extracting anatomical locations for a set of RAS coordinates

2019-03-20 Thread Sparsh Jain
UT.txt. > > Tim > > -- > Dr. Tim Schäfer > Postdoc Computational Neuroimaging > Department of Child and Adolescent Psychiatry, Psychosomatics and > Psychotherapy > University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany > > > On March 8, 2019 at 12:55

Re: [Freesurfer] Extracting anatomical locations for a set of RAS coordinates

2019-03-07 Thread Sparsh Jain
External Email - Use Caution I see. How may I check that? Sparsh On Thu, Mar 7, 2019 at 6:42 PM Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> wrote: > Is that point labeled as WM in the aseg? If so, then it is not a problem > with matlab:) > > On 3/7/19 5:

Re: [Freesurfer] Extracting anatomical locations for a set of RAS coordinates

2019-02-20 Thread Sparsh Jain
option. > > To find the label associated with each vertex, it is probably easiest > to use matlab using read_surf.m and read_annotation.m > > On 2/5/19 11:17 AM, Sparsh Jain wrote: > > > > External Email - Use Caution > > > > Good afternoon >

[Freesurfer] Extracting anatomical locations for a set of RAS coordinates

2019-02-05 Thread Sparsh Jain
External Email - Use Caution Good afternoon Is there is way to automatically extract the anatomical locations corresponding to a set of RAS coordinates using Freesurfer's atlas? I have a set of 200 points and I am trying to get their anatomical labels automatically. Thank you

[Freesurfer] Help with finding which functional areas house certain electrodes

2019-01-17 Thread Sparsh Jain
to create a 'table' of all anatomical areas and then find out which area of relevance lies closest to a particular point. Thank you Sparsh Jain ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo

[Freesurfer] Help with finding which functional areas house certain electrodes

2018-12-18 Thread Sparsh Jain
a 'table' of all anatomical areas and then find out which area of relevance lies closest to a particular point. Thank you Sparsh Jain ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] FreeSurfer Errors (2)

2018-10-16 Thread Sparsh Jain
; > On 10/16/2018 11:12 AM, Sparsh Jain wrote: > > > > External Email - Use Caution > > > > Hey! > > I sent two responses on Friday. The second response was bigger than 1 > > MB so it awaited moderator approval. I don't know if you received it &g

[Freesurfer] FreeSurfer Errors

2018-10-11 Thread Sparsh Jain
External Email - Use Caution Hey! I have recently started using FreeSurfer. I have encountered multiple errors over the past few days, and I would like to mention them all. 1. While testing the installation, the code ran for roughly 4-6 hours and generated the T1 and wm output