[Freesurfer] Control for eTIV on Voxelwise Wholebrain Analysis?

2021-09-27 Thread Wakim, Kathryn-Mary
External Email - Use Caution Hi all, I'm currently running a voxelwise whole-brain analysis on my recon-all data using the procedure outlined here: https://secure-web.cisco.com/1ltFRrUt9VeFo_xsJaFu_MKrnVu0LBNxjHernMBBefXqT5CCzVNrV8hZhKoZ0JnzBjvW180TesX_tU8ytDxVloUWD2g7eTNMxEdQ9

Re: [Freesurfer] QAtools with Freesurfer version 6.0 {Disarmed}

2020-07-13 Thread Wakim, Kathryn-Mary
Y53YSKuLUQRxhA&r=KhGiP9W8xiF_0U6IjkXyuA7kQ8FmHzcU4SZVtZYlKyjFb7nhlNPSlsFAXcoNHLMd&m=xnmzi17ibl1It9DLou7L7oMCle1syXLoa7SQbdm3Neg&s=MB094gCiER0Wz31Dh55WzULVoJZST-Dqq9fo5MudFPA&e=> best Andrew From: mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of "Wakim, Kathryn-Mar

[Freesurfer] How much recon editing is appropriate?

2020-06-30 Thread Wakim, Kathryn-Mary
External Email - Use Caution Hi everyone! Quick question. For my specific analysis, I’m most interested in the values given in the aseg.stats file. I’m comparing gray matter volumes from specific ROIs between patients and healthy controls. Thus, the outcome measures I will be r

[Freesurfer] Visualizing Talairach Registeration

2020-06-28 Thread Wakim, Kathryn-Mary
External Email - Use Caution Hi all, I’m a new FreeSurfer user, so I’d like to thank you all in advance for your patience! After running recon-all to completion, I reviewed the log file and found the warning "#@# Talairach Failure Detection.” I am assuming that this is a warnin