Re: Fwd: Re: [Freesurfer] qdec error

2008-02-08 Thread William R Mcgarry
[EMAIL PROTECTED] qdec]$ source FREESURFER_HOME/bin/tcl_setup bash: /usr/local/freesurfer/bin/tcl_setup: line 48: syntax error near unexpected token `setenv' bash: /usr/local/freesurfer/bin/tcl_setup: line 48: `if ( -e $TCLLIBPATH/tcl8.3 ) setenv TCL_LIBRARY $TCLLIBPATH/tcl8.3' [EMAIL

Re: Fwd: Re: [Freesurfer] qdec error

2008-02-08 Thread William R Mcgarry
[EMAIL PROTECTED] ~]$ source $FREESURFER_HOME/SetUpFreeSurfer.sh freesurfer-Linux-rh9-stable-pub-v4.0.2 Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer FSFAST_HOME /usr/local/freesurfer/fsfast FSF_OUTPUT_FORMAT nii

[Freesurfer] qdec error

2008-02-08 Thread William R Mcgarry
When trying to analyze some data in qdec, after I completed recon-all -all and -qcache for the subjects in my qdec table, I get to the Display tab and pick an option under Scalar. It doesn't matter which option, as they all give me the same two errors repeatedly (forcing me to quit qdec). These

Fwd: Re: [Freesurfer] qdec error

2008-02-08 Thread William R Mcgarry
I downloaded some packages for tcl and tk, but they didn't have any effect. I also get this error, which I forgot to include: ERROR: In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWTkUtilities.cxx, line 221 vtkKWQdecApp (0x881c1f0): Script: FsgdfPlot_IsWindowShowing 0 Returned Error on

[Freesurfer] Freesurfer qcache error

2008-02-01 Thread William R Mcgarry
When running qcache (on a recent version of freesurfer) after running recon-all -s 4964-14_recon -all command, I get the following error: ERROR: number of vertices in /usr/local/freesurfer/subjects/4964-14_recon/surf/lh.thickness does not match surface (138139,137319)ERROR: reading curvature