and unfold on the sphere (and don't use -i which inflates and
drives the surface to the sphere)
On Sat, 12 Apr 2014, Xuelong Zhao wrote:
I attempted the run again using
mris_sphere -w 1 -scale 1 lh.inflated lh.sphere_test
However, even with the -w 1 set the intermediate surfaces
inflation (as opposed to just at the end), also include -scale 1
cheers
Bruce
On Wed, 9 Apr 2014, Xuelong Zhao wrote:
Hi,
I would like to ask whether it is possible to display different levels of
cortical inflation?
I have been using the command: mris_inflate
stages of cortical inflation
yes, many of our binaries take the -w n flag to write out a snapshot of
the minimization every nth step, including mris_sphere
cheers
Bruce
On Thu, 10 Apr 2014, Xuelong Zhao wrote:
Is it also possible to track the inflation all the way to the sphere? I
Hi,
I loaded the lh.orig cortex for fsaverage into Matlab. My colleague and I found
that it actually has a duplicate point.
The index of the duplicate points are:
1
40970
I checked that both have the same vertices coordinates:
-36.7233 -18.4039 64.3611
I'm not sure if this is
Hi,
I would like to ask whether it is possible to display different levels of
cortical inflation?
I have been using the command: mris_inflate
but the -dist and -n flags do not seem to make that much difference. Also, if I
use fsaverage lh.orig as the input file and using the default options
need to do some
further processing? Thanks.
Date: Mon, 10 Mar 2014 11:25:23 -0400
From: gr...@nmr.mgh.harvard.edu
To: andrewz...@live.com.au
CC: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface
On 03/09/2014 09:12 AM, Xuelong Zhao
...@live.com.au
CC: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface
On 03/09/2014 09:12 AM, Xuelong Zhao wrote:
Hi Doug,
To clarify my previous question:
There is definitely some fuzziness when comparing with the mov,
whereas the target
Mar 2014 10:19:25 -0500
From: gr...@nmr.mgh.harvard.edu
To: andrewz...@live.com.au
CC: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface
On 3/6/14 6:39 AM, Xuelong Zhao wrote:
Hi Doug
/register?
Thanks again.
Date: Tue, 4 Mar 2014 22:52:38 -0500
From: gr...@nmr.mgh.harvard.edu
To: andrewz...@live.com.au
CC: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface
On 3/4/14 7:18 PM, Xuelong Zhao wrote
10:37:19 -0500
From: gr...@nmr.mgh.harvard.edu
To: andrewz...@live.com.au; freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Resting State Networks on Cortical Surface
On 03/03/2014 11:25 PM, Xuelong Zhao wrote:
Hi Doug, thanks for the quick reply. I've been playing around
mri_vol2surf
to map your ICs to the surface
doug
On 03/02/2014 04:21 AM, Xuelong Zhao wrote:
Hi,
I am trying to display the 20 ICA components in this nifti file
http://brainmap.org/icns/maps.zip
onto anatomical template they've provided here
http://brainmap.org/icns
Hi,
I am trying to display the 20 ICA components in this nifti file
http://brainmap.org/icns/maps.zip
onto anatomical template they've provided here
http://brainmap.org/icns/colin_tlrc_1x1x1.nii
My question is:
How do I extract only the cortical surface from the anatomical template and
12 matches
Mail list logo
