Re: [Freesurfer] New v5.0.0 release

2010-08-16 Thread Yuhong Jiang
This is very nice. I just tried to do an analysis in the new release under Mac OS X (10.6.4, Intel). However, retinotopic mapping would not run. I did sfa-sess -a rtopy -sf sessid -df sessdir. The error message says sfa-sess: Command not found. Any idea why this is the case? Thanks. -Yuhong On

[Freesurfer] displaying time course for blocked-design

2010-04-14 Thread Yuhong Jiang
Dear Freesurfer users, Is there a way to display time course information for blocked-design experiments? I have used the command tkmedit-sess, which displays time course information for event-related designs. However, it does not display anything like that for blocked design. Is it possible to

[Freesurfer] Retinotopy analysis ERROR: selfreqavg failed

2010-04-02 Thread Yuhong Jiang
Hi, I want to provide more information about the retinotopy analysis error in case someone has insight about the problem. Using the same exact commands (mkanalysis-sess.new, then sfa-sess), I was able to successfully run the retinotopy commands in my old Linux box (the version of sfa-sess was

[Freesurfer] retinotopic mapping with polar data only

2010-03-29 Thread Yuhong Jiang
Hi Doug, I was running Freesurfer's retinotopic mapping command (sfa-sesshttp://surfer.nmr.mgh.harvard.edu/fswiki/sfa-sess-a rtopy -s) with only polar angle data. An error was returned saying that it expects eccentricity data. Someone else posted this question last December and you replied and

[Freesurfer] lh.curv versus lh.curv.pial

2006-03-19 Thread Yuhong Jiang
the difference between these two files? Which one should be used for curvature overlay? Thanks. --Yuhong = Yuhong Jiang[EMAIL PROTECTED] 617-876-2054http://web.mit.edu/yuhong/www

[Freesurfer] Re: free-surfer file directory problem

2006-01-27 Thread Yuhong Jiang
that it will be looking for the newfolder? Thanks. --Yuhong = Yuhong Jiang[EMAIL PROTECTED] 617-876-2054http://web.mit.edu/yuhong/www

[Freesurfer] Re: mri_mask bug

2006-01-09 Thread Yuhong Jiang
(or normalization2) is not sufficient. --Yuhong = Yuhong Jiang[EMAIL PROTECTED] 617-876-2054http://web.mit.edu/yuhong/www

[Freesurfer] mri_mask bug

2006-01-06 Thread Yuhong Jiang
= Yuhong Jiang[EMAIL PROTECTED] 617-876-2054http://web.mit.edu/yuhong/www = ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] Re: mri_mask bug

2006-01-06 Thread Yuhong Jiang
as autorecon2 and normalization2)?? --Yuhong = Yuhong Jiang[EMAIL PROTECTED] 617-876-2054http://web.mit.edu/yuhong/www