Hi,
according to this page:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits_freeview ,
there is a separate protocol to correct cerebellar errors with rois such as the
lingual gyrus, fusiform and etc specially the creation of the
brain.finalsurfs.manedit file. I have a few ques
Hi all,
?
I know tkmedit has been deprecated, but we're thinking about using it just for
quality check purposes since we found that it is less resource intensive. We're
trying to load multiple labels, is there a way to do that so that each label is
assigned a different color (we know that's po
?Hi all,
For the sake of time, for one dataset we have that we want to extract
hippocampal/amygdala/thalamus subfields from, we ran it without manually
editing any portions of the brain. We're going to visually QC it, but do you
anticipate any trouble with the accuracy of the segmentation cons
list
Subject: [External] Re: [Freesurfer] rostral anterior cingulate fix?
Hi Victor
can you render the parcellation in that area on the surface (in freeview)
and show it to us?
cheers
Bruce
On Fri, 5 Jul 2019, Zeng,Victor (BIDMC - Psychiatry) wrote:
>
> Hi Freesurfer group -
>
>
?Hi all,
I'm having issues opening Freeview (The most recent version): it loads .mgz and
labels correctly, but then after 5 seconds it shuts off, giving off this error:
qt_xcb_createCursorXRender: query_pict_formats failed
[0]PETSC ERROR:
-
?Hi All,
I'm revisiting an old dataset that was previously run using FS 5.1, and now we
upgraded it to FS 6.0. I seem to notice there are different set of BA.labels,
ones that are called ?h.BA.label, and ones (generated from 6.0) called
?h.BA_exvivo.label. Is ?h.BA.label deprecated by ?h.BA_ex
Hi all,
I am running 7T scans through FS6, and I have been recommended to install the
tools in ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/
. So I ran the new recon-all.v6.hires, specifically with the command
"recon-all.hires.v6 -s subj -conf2hires -all"
For the most
wtX2itHqwTSSG0nhnBVKS8kqLM&e=>
there is a README file there with instructions on how to install and use
On 5/10/2019 11:18 AM, Zeng,Victor (BIDMC - Psychiatry) wrote:
Hi all,
I have a 7T dataset that I would like to have assistance in running FS6.0 for,
and I have us
Hi all,
I have a 7T dataset that I would like to have assistance in running FS6.0 for,
and I have used this page as a reference:
https://surfer.nmr.mgh.harvard.edu/fswiki/SubmillimeterRecon
I have some questions about the recon-all command, namely what the $IMAGE
variable actually means. Als
