Hi,
When I launch tkmedit, I only get the "Display" window with no "Tools"
window so I don't have any menus (I wanted to overlay a label file --
not sure how I do that from the command line either).
I don't see any errors in the terminal from where I launch tkmedit
-
Hi,
Newbie questionI want to take FreeSurfer labels (from an atlas in
fsaverage space) and convert it into a volumetric NIFTI mask. I ran the
following command, but I must be missing something because the output is
not in the right space (far too posterior):
$FREESURFER_HOME/bin/mri_label
is not in the right place? You should view
it on the 2mm MNI152 using freeview. Also, your label should be a label
in fsaverage space.
On 3/27/18 9:52 AM, gj wrote:
> Hi,
>
> Newbie questionI want to take FreeSurfer labels (from an atlas in
> fsaverage space) and convert it into a vo
our source space (VPNL) to the MNI152. If you have
> a whole brain in VPNL, then you can run recon-all on it to generate
> surfaces. Do the same thing with the MNI152, then use mri_label2label
> with surface registration to map between the two.
>
> On 03/29/2018 07:08 AM, gj wrot
