Re: [Freesurfer] [FSFAST] Matlab parallel

2017-02-06 Thread Douglas N Greve
That should work (the env var is FSF_OUTPUT_FORMAT). You will also need to set it in your linux shell before running any of the scripts On 02/03/2017 09:51 AM, Seung-Goo KIM wrote: > Hi all, > > So this is a question about running FAST through matlab parallel > desktop: I know it is very funny

Re: [Freesurfer] [FSFAST] Matlab parallel

2017-02-06 Thread Seung-Goo KIM
+Self-update: I figured out “.nii” works well. I thought “.mgz" should work well, but "preproc-sess” tried to read “template.mgz.nii” while it creates “template.nii”. So just the simple format “.nii” works well even in a harsh virtual environment (e.g.,matlab>parallel-workers>bash>csh>matlab). -

[Freesurfer] [FSFAST] Matlab parallel

2017-02-03 Thread Seung-Goo KIM
Hi all, So this is a question about running FAST through matlab parallel desktop: I know it is very funny (and inefficient) because I open up a bash in the matlab to run a csh script that generates and runs a matlab code, but just I’m familiar with matlab in doing many things including string m