Re: [Freesurfer] mri_convert issue

Thanks a lot for your reply. Also, my apologies about giving you a hard time. Again, thanks for the reply. Best regards, DaWoon > 2016. 11. 15. 오전 12:54, Douglas N Greve 작성: > > Hi, we do not support a tool to do this, sorry. I think you can do it in > FSL with

Re: [Freesurfer] mri_convert issue

Hi, we do not support a tool to do this, sorry. I think you can do it in FSL with fslswapdim. Try contacting the FSL list On 11/14/2016 07:52 AM, DaWoon Heo wrote: > Dear Freesurfer experts, > > I would like to use the ‘mir_convert --out_orientation LAS’ to change the > orientation of my data

[Freesurfer] mri_convert issue

Dear Freesurfer experts, I would like to use the ‘mir_convert --out_orientation LAS’ to change the orientation of my data (i.e. fMRI T1 data). From several materials, I could find it is not a good idea to change the orientation. However, to improve the efficacy of ‘bet’, it seems converting the

Re: [Freesurfer] Mri_convert issue

do you have gzip installed on your system? It's pretty universal these days. cheers, Bruce On Fri, 16 Jan 2009, Barnali Basu wrote: HI I am trying to convert a .nii file to .mgz , however, it throws the following when i run it mri_convert -it nii -i NAG_S3_anatomical_CLEAN.nii.gz -ot mgz

[Freesurfer] Mri_convert issue

HI I am trying to convert a .nii file to .mgz , however, it throws the following when i run it mri_convert -it nii -i NAG_S3_anatomical_CLEAN.nii.gz -ot mgz -o anat.mgz mri_convert -it nii -i NAG_S3_anatomical_CLEAN.nii.gz -ot mgz -o anat.mgz $Id: mri_convert.c,v 1.146.2.3 2008/08/11 22:18:58