Hi, we do not support a tool to do this, sorry. I think you can do it in FSL with fslswapdim. Try contacting the FSL list
On 11/14/2016 07:52 AM, DaWoon Heo wrote: > Dear Freesurfer experts, > > I would like to use the ‘mir_convert --out_orientation LAS’ to change the > orientation of my data (i.e. fMRI T1 data). > From several materials, I could find it is not a good idea to change the > orientation. However, to improve the efficacy of ‘bet’, it seems converting > the orientation is necessary. > The problem is, when I use ‘mir_convert --out_orientation LAS’, I could find > some top of the skull and brain areas were severed. > Thus, may I ask you for an advice to solve this problem? > Many thanks in advance. > > Best regards, > DaWoon > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
