Re: [Freesurfer] AAL 3D rendering with subcorticals

2016-03-19 Thread Douglas Greve
Did you check the volume to verify that at least one voxel has an index = 75 ? On 3/19/16 10:43 AM, João V. Dornas wrote: Dear friends, I am following this procedures to plot a 3D rendering of the AAL volume (https://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg27707.html). My

[Freesurfer] AAL 3D rendering with subcorticals

2016-03-19 Thread João V. Dornas
Dear friends, I am following this procedures to plot a 3D rendering of the AAL volume (https://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg27707.html). My problem is the following. When I execute this command: mri_cor2label --i lh.Colin27_aal2std.mgh --id 75 --l lh_Pallidum_L