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Hi Doug,
I've tried the new version You posted - it works fine as well. Many thanks!
Best regards,
Patrycja
2018-07-16 19:58 GMT+02:00 Douglas N. Greve :
>
> Oh, I see now. It never failed for me because matlab is defined in my
> path. I think the
Oh, I see now. It never failed for me because matlab is defined in my
path. I think the right logic is
if($FS_MKCON_USE_BIN == 0 && UseOctave == 0) then ...
I've put a new version here
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mkcontrast2
Can you try it out?
On 07/06/2018 01:20 PM,
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Hi Doug,
I walked through the mkcontrast2 and found it failed when executing the
loop below:
if($FS_MKCON_USE_BIN == 0) then
set MATLAB = `getmatlab`;
if($status) then
echo "ERROR: cannot find matlab. Is it in your path?"
exit 1;
endif
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OK - I double checked, and even compared the new mkcontrast2 with the old
one to verify that I copied all as I should (see below). Still the
mkcontrast2 exits when checking $FS_MKCON_USE_BIN with the same error
message (no matter if this variable is
questions answered below
On 07/03/2018 01:14 PM, Patrycja Naumczyk wrote:
>
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>
> Douglas,
>
> thanks a lot - unfortunately this still doesn't work - it stops at the
> same cause:
>
> mkcontrast-sess -analysis PASAT.sm5.lh -contrast test -a 1 -c 0
> INFO:
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Douglas,
thanks a lot - unfortunately this still doesn't work - it stops at the same
cause:
mkcontrast-sess -analysis PASAT.sm5.lh -contrast test -a 1 -c 0
INFO: Found 2 Non-Null Conditions
INFO: Found 3 Delays
Condition Weights:
Sorry for the delay. I've put a new version here
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mkcontrast2
copy it to $FREESURFER_HOME/fsfast/bin
On 07/03/2018 12:13 PM, Patrycja Naumczyk wrote:
>
>
> Hi all,
>
> I'll repost - does FSv6 no longer support octave for FS-Fast processing?
>
>
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Hi all,
I'll repost - does FSv6 no longer support octave for FS-Fast processing?
Would appreciate clarification on this :)
Patrycja
2018-06-29 21:41 GMT+02:00 Patrycja Naumczyk :
> Hi all,
>
> I just switched from FS 5.3 to 6.0 on Gentoo Linux.
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Hi all,
I just switched from FS 5.3 to 6.0 on Gentoo Linux. Previously Freesurfer
worked fine under octave setup (as specified here:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-January/022135.html),
but after the update, when I tried
