External Email - Use Caution Hi all,
I'll repost - does FSv6 no longer support octave for FS-Fast processing? Would appreciate clarification on this :) Patrycja 2018-06-29 21:41 GMT+02:00 Patrycja Naumczyk <patrycja.naumc...@gmail.com>: > Hi all, > > I just switched from FS 5.3 to 6.0 on Gentoo Linux. Previously Freesurfer > worked fine under octave setup (as specified here: > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/ > 2012-January/022135.html), but after the update, when I tried testing a > MATLAB related function I get an error: > > mkcontrast-sess -analysis PASAT.sm5.lh -contrast test -a 1 -c 0 > INFO: Found 2 Non-Null Conditions > INFO: Found 3 Delays > Condition Weights: 1.00000000000000000000 0 > mkcontrast2 -config PASAT.sm5.lh/test.config -anadir PASAT.sm5.lh -wcond > 1.00000000000000000000 0 -sumconds -o PASAT.sm5.lh/test.mat -wdelay 1 0 0 > -octave > $Id: mkcontrast2,v 1.3 2016/03/11 23:46:48 greve Exp $ > cmtxfile PASAT.sm5.lh/test.mat > nconds 2, wcond 1.00000000000000000000 0 > ndelays 3, wdelay 1 0 0 > ndelays 3, wpsa > sumconds 1 > sumdelays 0 > nircorr 0 > TER 0.050000 > rdelta > rtau > ERROR: cannot find matlab. Is it in your path? > ERROR running mkcontrast > mkcontrast2 -config PASAT.sm5.lh/test.config -anadir PASAT.sm5.lh -wcond > 1.00000000000000000000 0 -sumconds -o PASAT.sm5.lh/test.mat -wdelay 1 0 0 > -octave > Fri Jun 29 21:21:16 CEST 2018 > > It seems that the environment variable (FS_USE_OCTAVE) is recognized > correctly (the function runs with "-octave" flag), but somehow is omitted > during execution? What can I do about it? > > I checked that v.5.3 used mkcontrast, whereas v.6.0 uses mkcontrast2 which > does not seem to support octave? Is it possible to force calling mkcontrast > instead of mkcontrast2? > > Best regards, > Patrycja >
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