Re: [Freesurfer] BUG: bbregister --init-best needs to unset InitCoreg

2017-03-13 Thread Douglas N Greve
just use mri_coreg -- that is the best! On 03/13/2017 04:27 PM, Christopher Markiewicz wrote: > Hi all, > > bbregister --init-best always produces "ERROR: cannot spec an init > method with --init-best", because InitCoreg is defined as 1 by > default, and never set to 0 by --init-best. (Setting

[Freesurfer] BUG: bbregister --init-best needs to unset InitCoreg

2017-03-13 Thread Christopher Markiewicz
Hi all, bbregister --init-best always produces "ERROR: cannot spec an init method with --init-best", because InitCoreg is defined as 1 by default, and never set to 0 by --init-best. (Setting something else that unsets InitCoreg will trigger the same error.) Example, given SUBJ and EPI: $ bbregis