Hi
can you send part of recon-all.log and do recon-all -i 242.nii.gz -s
242_FS -nuintensitycor-3T -nocanorm -openmp 8 -use-cuda -hippo-subfields
-all -debug
Knut J
On 06/29/2013 06:06 PM, Salil Soman wrote:
Hi,
I am running freesurfer 5.3 on an ubuntu 13.04 with a nvidia card and
the the
Hi,
I am running freesurfer 5.3 on an ubuntu 13.04 with a nvidia card and the
the CUDA drivers installed. I am getting the following error when I try
using the use-cuda command:
Testing for CUDA device:
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2012 NVIDIA Corporation
Built on Fri_
I get a
CUDA error: MRISCcomputeVertexDistances: invalid device function .
during mris_sphere_cuda with a Quadro FX 5600, see the log below, any
advice?:
\n mris_sphere_cuda -q -seed
1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix \n
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 20
sorry it didnt work. i figured there was a reason we built with 1.1 and
not 1.0, but forgot what it was (it appears our gpu code requires some
functionality found in 1.1 and newer).
n.
On Mon, 2011-10-31 at 15:36 -0400, Hemant Bokil wrote:
> It was indeed using mri_em_register_cuda. I will check
It was indeed using mri_em_register_cuda. I will check with a different
card. Thanks a lot,
Hemant
On Mon, Oct 31, 2011 at 3:24 PM, Nick Schmansky
wrote:
> which binary was running when this error occurred? consult the
> recon-all.log to find out. if it was mri_em_register_cuda or
> mri_ca_regi
which binary was running when this error occurred? consult the
recon-all.log to find out. if it was mri_em_register_cuda or
mri_ca_register_cuda, then it would appear that it is attempting to use
a function not supported by compute capability 1.0, which means your
card is not supported.
n.
On M
Hi Nick,
Thanks for generating those files. The code ran through more steps this
time (with the new files) but I now have the following error:
Cuda error: MRImeanX kernel failed in file 'mrimean_cuda.cu' in line 578 :
invalid device function.
register_mri: find_optimal_transform
Would you be abl
Hemant,
We dont have any cards here that are compute capability 1.0. Our test
cards are all 1.3 or higher.
We do compile with -arch sm_11 (compute capability 1.1). I've
recompiled mri_em_register_cuda and mri_ca_register_cuda with -arch
sm_10 and put them here:
https://surfer.nmr.mgh.harvard
Hi Richard and others,
I installed the earlier driver and the toolkit, but I sill have the same
crash. A portion of the log just before the crash is below. Any thoughts ?
Hemant
mri_em_register_cuda -skull nu.mgz
/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca
transforms/talairach_wi
On Mon, Oct 24, 2011 at 9:28 PM, Hemant Bokil wrote:
> Thanks for the response. Does this mean that I should use CUDA 3.2 ? There
> was some discussion on the group recently about Freesurfer not working with
> CUDA 4 and one suggestion made was to switch to CUDA 3.2. Thanks,
Probably. NVIDIA alw
HI Richard,
Thanks for the response. Does this mean that I should use CUDA 3.2 ? There
was some discussion on the group recently about Freesurfer not working with
CUDA 4 and one suggestion made was to switch to CUDA 3.2. Thanks,
Hemant
On Mon, Oct 24, 2011 at 7:07 PM, R Edgar wrote:
> On Mon, Oc
On Mon, Oct 24, 2011 at 3:36 PM, Hemant Bokil wrote:
> Driver : 4.10
> Runtime : 3.20
My best guess would be this mismatch causing a problem. It shouldn't
in theory, but...
Richard
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Freesurfer@nmr.mgh.harvard.edu
https://mai
Hi all,
Here are the details of my freesurfer and linux installations
FREESURFER_HOME: /usr/local/freesurfer
Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
RedHat release: CentOS Linux release 6.0 (Final)
Kernel info: Linux 2.6.32-71.29.1.el6.x86_64 x86_64
I successfully ran au
Tue, 4 Oct 2011 11:49:50 -0400
> > From: freesurfer@gmail.com
> > To: freesurfer@nmr.mgh.harvard.edu
> > Subject: Re: [Freesurfer] cuda error...
>
> >
> > On Tue, Oct 4, 2011 at 11:15 AM, Gonzalo Rojas Costa
> > wrote:
> >
> > > I installed
Hi
You should use Cuda 3.1 which is included with Freesurfer. Freesurfer is not
compiled to use Cuda 4.0 or Cuda 4.1
Knut J
> Date: Tue, 4 Oct 2011 11:49:50 -0400
> From: freesurfer@gmail.com
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] cuda error...
>
On Tue, Oct 4, 2011 at 11:15 AM, Gonzalo Rojas Costa
wrote:
> I installed CUDA 4 in a Ubuntu 10.10 based workstation... I tried to
> process a volume, but I got the following error:
>
> "writing output transformation to transforms/talairach_with_skull.lta...
> CUDA Error in file 'gcasgpu.cu' on
Hi:
I installed CUDA 4 in a Ubuntu 10.10 based workstation... I tried to
process a volume, but I got the following error:
"writing output transformation to transforms/talairach_with_skull.lta...
CUDA Error in file 'gcasgpu.cu' on line 159 : unspecified driver error.
registration took 15 minutes
On Fri, 2011-03-11 at 09:11 -0700, Rojas, Don wrote:
> I'm having a problem similar to those that some others have posted
> previously on the list, but I did not see a clear resolution posted
> and I have tried the suggestions as far as I could follow them. The
> error message is:
>
> Acquiring
Hi,
I'm having a problem similar to those that some others have posted previously
on the list, but I did not see a clear resolution posted and I have tried the
suggestions as far as I could follow them. The error message is:
Acquiring CUDA device
Using default device
CUDA Error in file 'devicem
we will try to post a new tarball of _cuda binaries that are 1.1
compatible this week (once our file systems are back in shape...).
n.
On Wed, 2010-08-25 at 12:07 -0300, Pedro Paulo de Magalhães Oliveira
Junior wrote:
> 8500GT is Cuda Compute Capability 1.1 (It won't probably work in this
> versi
8500GT is Cuda Compute Capability 1.1 (It won't probably work in this
version of FreeSurfer)
-
Pedro Paulo de Magalhães Oliveira Junior
Diretor de Operações
Netfilter & SpeedComm Telecom
-- www.netfilter.com.br
-- For mobile: http:
Hi. folks.
I'm trying to execute new cuda binaries in freeserfer 5.0.
When I tried to run it (e.g. mri_em_register_cuda), I got the following
error.
==
=
Acquiring CUDA device
Using default device
CUDA device: Ge
Hi.
The 8500GT has CUDA compute capabilities 1.1 so probably it won't work for
now.
-
Pedro Paulo de Magalhães Oliveira Junior
Diretor de Operações
Netfilter & SpeedComm Telecom
-- www.netfilter.com.br
-- For mobile: http://www.ne
Hello,
I am running FS V5.0 on personal computer outside the Martinos Center.
The OS is CentOS 5.5, and the hardware is NVIDIA Geforce 8500 GT graphic
card with latest driver (NVIDIA-Linux-x86_64-256.44.run).
CPU: Intel(R) Core(TM)2 CPU 4400 @ 2.00GHz
Thanks for your help.
p.s. I made some mista
Hi,
I have Install CUDA toolkit 3.1 (for Ubuntu Linux 9.10),
'fscudabins-linux-centos4_x86_64.tgz', and update the NVIDIA driver.
And compiled as "recon-all -all -s subject1 -use-gpu"
However, I got the CUDA error message:
"CUDA error in file
'/space/freesurfer/build/minerva/stable/dev/include/vo
no sure about that error, but clearly we need to look at that
devicemanagement.cu code as it seems to be the gate keeper to getting
anything running.
we'll see if we can get that code to produce some useful error message
and post a new _cuda tarball.
n.
On Tue, 2010-08-24 at 11:48 -0400, Gonzalo
Hi:
I installed the latest NVIDIA driver (256.44) in my DELL Precision T3500
(Quadro FX-580 graphic board, Ubuntu 9.04)... Then I installed CUDA Toolit
3.1 (for Ubuntu 9.10)... Then, I restart my computer... I tried to process a
study with the freesurfer command:
"recon-all -autorecon1 -s ingri
this error appears to be different from the original one. your error
says "CUDA driver version is insufficient for CUDA runtime version.".
so you should make sure you have the latest nvidia driver (v256) which
has the latest cuda runtime libs.
n.
On Mon, 2010-08-23 at 13:32 -0400, Gonzalo Rojas
Hi Nick:
I uncompressed the file "fscudabins-linux-centos4.tgz", but I continue to
get the error:
"mri_em_register_cuda -skull nu.mgz
/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca
transforms/talairach_with_skull.lta
Acquiring CUDA device
Using default device
CUDA Error in file
CUDA users,
The problem with the _cuda binaries (message: CUDA Error in file
'devicemanagement.cu'...) has been fixed, and new binaries are available
for download from here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos4_x86_64/
download the file 'fscudabins-linux-centos
Actually I believe it's related with the CUDA architecture itself.
You cannot run multiple CUDA process at the same time in the same GPU, in a
multi-core environment it may happen if you start multiple recon-all.
-
Pedro Paulo de
hello cuda beta users! this problem 'all CUDA-capable
devices are busy or unavailable.', seems to fall into the category of
'post-release curse', because i am seeing this problem locally as well,
but havent seen it in the months we've been using the gpu code. we have
found rebooting the machine s
Hi folks,
I'm trying to employ the new cuda binaries, which come with freesurfer
version 5.0.0, however, if I'm trying to execute a cuda binary (e.g.
mri_ca_register_cuda) I get the following output:
Acquiring CUDA device
Using default device
CUDA Error in file 'devicemanagement.cu' on line 4
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