use mri_vol2vol, like
mri_vol2vol --mov CT.nii --reg v1t2.lta --fstarg --o CT-in-anat.nii
On 6/15/16 9:58 AM, HARI GURAGAIN wrote:
Dear Douglas,
With the suggestions from Zeke, the mri_coreg is working now. I have
one last question:
I got the new v1to2.lta. How to apply this transformation to
Dear Douglas,
With the suggestions from Zeke, the mri_coreg is working now. I have one last
question:
I got the new v1to2.lta. How to apply this transformation to the CT image? Is
it by using mri_convert?
Something like below?
mri_convert -at v1to2.lta CT.nii new_CT.nii
Any suggestion will be g
Hello Hari,
In order to use mri_coreg on Mac, you will need to download the
"Development Version" of freesurfer. See the following page under
Development Version:
https://surfer.nmr.mgh.harvard.edu/fswiki/Download
Once downloaded, uncompress the .tar.gz file to some directory on your
machi
Dear Douglas,
I have used the same file as you pointed, but it keeps on showing the same
error message. I copied the file to my /Applications/freesurfer/bin directory
but it still shows the same error message:
>> ‘dyld: Library not loaded: @executable_path/../lib/gcc/lib/libgomp.1.dylib’
>> Refe
try
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg.mac
On 06/09/2016 06:21 PM, HARI GURAGAIN wrote:
> Dear Douglas,
>
> The executable is not working as it says ‘Library not loaded:
> @executable_path/../lib/gcc/lib/libgomp.1.dylib’
> Referenced from: /Applications/free
Dear Douglas,
The executable is not working as it says ‘Library not loaded:
@executable_path/../lib/gcc/lib/libgomp.1.dylib’
Referenced from: /Applications/freesurfer/bin/mri_coreg.mac
Reason: image not found
Trace/BPT trap:5
I am currently using the freeview: Version 1.0 and the operating sys
No, it is not the same command line. If you run it without args, it will
give you some info, but it is basically
mri_coreg --mov vol1.nii --targ vol2.nii --reg v1to2.lta
On 06/09/2016 05:22 PM, HARI GURAGAIN wrote:
> Thank you Douglas.
> One more thing: Is there any syntax how to use it? I wond
Thank you Douglas.
One more thing: Is there any syntax how to use it? I wonder if it is same as
the mri_robust_register?
> On Jun 9, 2016, at 3:43 PM, Douglas N Greve wrote:
>
> I don't think robust register will do cross-modal. You may be better off
> using mri_coreg, which you can get from
I don't think robust register will do cross-modal. You may be better off
using mri_coreg, which you can get from here
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_coreg
On 06/09/2016 01:58 PM, HARI GURAGAIN wrote:
> Dear Freesurfer community,
>
> I am relatively new to this
Dear Freesurfer community,
I am relatively new to this community.
I was trying to register the CT image and the MRI images (MRI as a the target
volume and CT as the movable volume). I used the mri_robust_register to to do
the registration as below:
mri_robust_register --mov vol1.nii --dst vol2
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